Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq327 131 2e-25 seq250 131 2e-25 >seq327 Length=13998812 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | || || |||| || |||||||| |||||||| Sbjct 3501121 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCGAA 3501062 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||| ||| |||||| ||| | | Sbjct 3501061 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTT 3501002 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || |||| ||||||||| ||||| |||||||| || || Sbjct 3501001 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 3500942 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 3500941 GAAGATCTGCAT 3500930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| ||||||||||| ||||| || |||| || Sbjct 3500910 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 3500851 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 |||||||| |||||||| ||||| |||||||| || | || | | |||||| Sbjct 3500850 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 3500798 >seq250 Length=5469655 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | || |||||| ||||| ||||| ||||| || ||||| | Sbjct 3557635 CGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCA 3557576 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||| || | ||| | | ||||||| Sbjct 3557575 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTG 3557516 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||| || | || || || | || ||| Sbjct 3557515 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 3557456 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 || || ||||| || ||||| || ||||| ||||| ||| || Sbjct 3557455 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAAC 3557414 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | || ||||| || || ||||||||||| |||||||| | Sbjct 4640806 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 4640865 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||| || | || | || |||||| Sbjct 4640866 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 4640925 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||| | || || || | |||||| Sbjct 4640926 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 4640985 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| || || ||||| || || || ||||| || Sbjct 4640986 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 4641023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229822507280