Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq328 253 2e-62 seq250 143 3e-29 seq327 100 3e-16 >seq328 Length=4755327 Score = 253 bits (280), Expect = 2e-62 Identities = 313/428 (73%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| |||| |||| | |||||||| ||||| ||||| |||||||| || || || Sbjct 1649636 CAGCTCGAGCAGCAAGCGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTT 1649577 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | ||||||| | ||||||||| || | || || || |||||||| |||||| Sbjct 1649576 CATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGC 1649517 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 ||| || ||| ||| | |||||| || |||| ||||||| || ||||||||| Sbjct 1649516 ATCGCGGATGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACAT 1649457 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| ||||||||||| |||| || ||||| | || || || ||||| ||| || Sbjct 1649456 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 1649397 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | || ||||| ||||| || || || ||||| || || |||||||| || || || Sbjct 1649396 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 1649337 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| ||||| || || ||||||||||| | |||||||| || |||| | ||||| Sbjct 1649336 GAAGATACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 1649277 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||||| ||||||||| || ||||| || |||||||||| |||||||||||| Sbjct 1649276 CGAGATCCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1649217 Query 133131 GTTCAACA 133138 || |||| Sbjct 1649216 ATTGAACA 1649209 Score = 176 bits (194), Expect = 5e-39 Identities = 209/281 (74%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 133148 TCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 |||||| |||| || | ||| |||||||| || ||| ||||| || ||| || | Sbjct 1649094 TCTCTTTCGAGTCGCGGATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACAT 1649035 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 | ||||| || || || |||||||| ||||| |||||||| |||||||| || || Sbjct 1649034 TTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGC 1648975 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 ||| || || |||||||| ||||| ||||| |||||| ||||| || |||||||||| Sbjct 1648974 TGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCA 1648915 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTG 133386 |||| ||||| ||||| ||| | |||| ||| ||||||||| | |||||||| Sbjct 1648914 CGTGGGAAATGAAGTGGCGTTCGCTCGGTTTCA-GCGACTCCCAGTCCTTCATGTCCTTG 1648856 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||| || ||||| || || ||||| || || || || || Sbjct 1648855 GACAGATCAACCTCTTCCACCGTCCAGAAGGAAGCTTCCGC 1648815 >seq250 Length=5469655 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || |||||| | Sbjct 4641024 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 4640965 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | || | ||| |||| ||||| || || |||||| | || Sbjct 4640964 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4640905 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||| Sbjct 4640904 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 4640845 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || |||||| |||| || ||| |||||||||| Sbjct 4640844 CAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 4640806 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| || Sbjct 3557418 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3557477 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | || | | | | | || | || |||| ||||| |||||||| |||||| || Sbjct 3557478 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAAT-CCCGCCAGA 3557536 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| || | ||||| || ||| || Sbjct 3557537 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTA 3557596 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| |||| || ||| |||||||||| Sbjct 3557597 CAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCG 3557635 >seq327 Length=13998812 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 3500930 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 3500989 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || ||||| ||||| | || || Sbjct 3500990 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCA 3501048 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 3501049 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAA 3501108 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | | || || ||||| || ||| Sbjct 3501109 CATCCAGAAGGAGTCACCCCTTCACTTGGTTCTTCGT 3501145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165209877760