Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq328 98.7 1e-15 seq882 84.2 3e-11 >seq328 Length=4755327 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| ||||| || | || || || |||||||||||||||||| ||| ||| Sbjct 1649291 CTTTGGCGAGCGGGTCGTGGCTTTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTT 1649350 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | ||| || | ||||| |||||||| || || ||||| || ||| |||||| ||||| Sbjct 1649351 CGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGA 1649410 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| || ||||| || || ||| || ||||| Sbjct 1649411 GCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTGC 1649449 >seq882 Length=7972872 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 163546 CTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGC 163605 |||||| || || || ||||| || ||| | ||||||||| || ||| | || || || Sbjct 57003 CTATGGCCGGGTGGCTCCACGTTCCGGTTTGGCTGTGAAAAACTTCATCGATGTGGGCGC 56944 Query 163606 GGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATG--GA 163663 ||||| | || |||||| ||| | ||| ||| || || |||||||| || Sbjct 56943 CGGTGTCGTCGACGAGGACTACCGGGGCAACGTCGGAGTTGTACTGTTCAATCACTCCGA 56884 Query 163664 GACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGGTGT 163723 |||||| |||||| || |||| ||||| ||||||||||| || || |||| Sbjct 56883 GACAAA--CTTTGAAGTTAAGAAAGGGGATCGCATCGCACAGTTTATTTGCGAGAAAATA 56826 Query 163724 GAGACACCCGATGTGGAGGAAATTGGTCTCCTTGAAGAGACGGAGAGGGGTGCGGGTGGT 163783 | || ||| |||| || || ||| || |||||| | || ||||||||| Sbjct 56825 GCTTATCCGGATTTGGAAGAGCTTCCAACGCTTACCGATACGGAGCGTGGAGCGGGTGGT 56766 Query 163784 TTTGGGTCTACTGGCAC 163800 || || || || ||||| Sbjct 56765 TTCGGATCGACCGGCAC 56749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732980234080