Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1104 129 4e-25 seq250 100 2e-16 seq327 82.4 5e-11 >seq1104 Length=7559990 Score = 129 bits (142), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||| || | || | | ||||| |||| || ||| ||||| ||||||||||| Sbjct 5393667 ATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTC 5393726 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 ||| ||| | || |||| |||||||| ||||||||||| || || || ||||| ||| | Sbjct 5393727 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGG 5393786 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCC 34928 ||| | ||||||||||| ||||| || || || || |||| || | | Sbjct 5393787 CGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCAC--ATTCTCAATCGTATCGGAAGGC 5393844 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||| ||||| ||||| || ||||| ||||| || ||||||||| Sbjct 5393845 TCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 5393898 Score = 127 bits (140), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| ||| ||| ||||| |||||||||||||| ||| | || |||| || Sbjct 5393916 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTC 5393975 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || || || ||||| ||| |||| | ||||||||||| Sbjct 5393976 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 5394035 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || |||| || | |||||| || | || ||||| Sbjct 5394036 GATCTTCGCCTTCAC--ATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTC 5394093 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| ||||| || ||||||||| Sbjct 5394094 TTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 5394126 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| || ||| ||||| |||||||||||||| ||| | || |||| || Sbjct 5394144 AACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTC 5394203 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| || || || || || ||||| ||| |||| | ||||||||||| Sbjct 5394204 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 5394263 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | |||||| || | || ||||| Sbjct 5394264 GATCTTCGCCTTCAC--ATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTC 5394321 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||| ||||| || ||||||||||| Sbjct 5394322 TTTCCGGTCAGAGTTTTCACGAAAATCTGCATATT 5394356 >seq250 Length=5469655 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || || | || |||| |||||||| || ||||| || Sbjct 3557611 TCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 3557552 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| |||| | ||||||||||| |||||| || || || Sbjct 3557551 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 3557494 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||| || || | ||| ||||| || |||||||| || || | Sbjct 3557493 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGA 3557434 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 3557433 CGAAGATCTGCATCTT 3557418 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || || | || |||| |||||||| || ||||| || Sbjct 4640829 TTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 4640888 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || |||||||| ||||| || || | Sbjct 4640889 GATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCAC--A 4640946 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || | ||| || || | || ||||| || || ||||| || ||| Sbjct 4640947 TTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTC 4641006 Query 34968 ACAAAGATCTGCATATT 34984 || || |||||||| || Sbjct 4641007 ACGAAAATCTGCATGTT 4641023 >seq327 Length=13998812 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| | || ||||| ||||| ||||| || | | | ||| | || || Sbjct 3501139 AACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTC 3501080 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || ||||| || || | || ||||| ||| | || | |||||||| || Sbjct 3501079 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTG 3501020 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 3501019 GATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 3500960 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 3500959 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 3500930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628796842992