Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq250 132 4e-26 seq272 114 1e-20 seq327 98.7 8e-16 >seq250 Length=5469655 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || || ||||| |||| || ||| | |||| |||| || Sbjct 4640817 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTG 4640876 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || ||||||||||| || || || || || Sbjct 4640877 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 4640936 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | ||||| || | || || ||||| |||| || |||||||| Sbjct 4640937 TGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 4640996 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||| || || ||||||||| || Sbjct 4640997 GAGTGTTTTCACGAAAATCTGCATGTTT 4641024 >seq272 Length=5604218 Score = 114 bits (126), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 |||||||| || || || || ||| | ||||||| || ||||| ||| ||||| ||| Sbjct 4888829 TTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTGCCAAAGATTTCGCGC 4888888 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| ||||| | ||||||| | || || ||||||||||||||| | || ||||| Sbjct 4888889 TCCTTCCAGCCCTGATCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACCCGTTC 4888948 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACT 13831 |||||||| ||||||| |||||| ||||| | ||| || || | | || | Sbjct 4888949 GGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCC 4889008 Query 13832 GTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 |||| | | ||| || | || ||||| ||||| || || | || | |||||| Sbjct 4889009 TCGGGCGTTTTCGTCCACTCCAGAATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGC 4889068 Query 13892 ATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCG 13951 || ||||| | | | | ||| ||| || | |||||||| |||||| |||| | Sbjct 4889069 ATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTG 4889128 Query 13952 G 13952 | Sbjct 4889129 G 4889129 >seq327 Length=13998812 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||||| || || || || || ||||| |||| | || | | Sbjct 3501145 ACGAAGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 3501086 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| |||||||| || || ||||||||||| ||||| || ||||| || || || Sbjct 3501085 GTCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 3501026 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || || || || | || | ||||| |||| || || || || |||| Sbjct 3501025 ATCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGAT 3500966 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | || || || || ||||||||| Sbjct 3500965 GGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 3500929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396272536813398