Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq882 154 1e-32 seq250 105 5e-18 seq1104 89.7 4e-13 >seq882 Length=7972872 Score = 154 bits (170), Expect = 1e-32 Identities = 224/314 (71%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 8993 AATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GGAA 9048 ||||||| ||||| || || || || ||| |||| || | || || || ||| |||| Sbjct 56744 AATTAGTGCCGGTCGATCCGAAACCACCCGCTCCACGCTCCGTATCGGTAAGCGTTGGAA 56803 Query 9049 GTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCC 9108 | |||| ||| |||||| |||| || ||||| || || || || | ||| Sbjct 56804 G----CTCTTCCAAATCCGGATAAGCTATTTTCTCGCAAATAAACTGTGCGATGCGATCC 56859 Query 9109 CCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168 || || || || |||||| ||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 56860 CCTTTCTTAACTTCAAAGTTTGTCTCGGAGTGATTGAACAGTACAACTCCGACGTTGCCC 56919 Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228 | ||| ||||| |||| ||||| || ||||| |||||||||| || || || | || Sbjct 56920 CGGTAGTCCTCGTCGACGACACCGGCGCCCACATCGATGAAGTTTTTCACAGCCAAACCG 56979 Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATG 9288 || || || || | || || |||||||| |||| | || ||| | | ||||||||| Sbjct 56980 GAACGTGGAGCCACCCGGCCATAGCATCCTTCCGGCACCTGGACCTGGATGTCGGTCATC 57039 Query 9289 ACCAGCCCCTTGCC 9302 || ||| ||||| Sbjct 57040 ACGAGCTGTTTGCC 57053 >seq250 Length=5469655 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||| Sbjct 4640803 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 4640862 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||| ||| Sbjct 4640863 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 4640922 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 4640923 TTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 4640982 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 4640983 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 4641020 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || |||||||| || || | || Sbjct 3557638 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGG 3557579 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 3557578 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 3557519 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 3557518 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 3557459 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 3557458 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 3557417 >seq1104 Length=7559990 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || || || || || || || || || || | || | || ||| Sbjct 5393689 ACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 5393748 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| ||||| ||||| | || | ||||||||||| Sbjct 5393749 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5393808 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | || || | ||| || |||| || || || ||| Sbjct 5393809 ATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTCTTT 5393868 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 5393869 CCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| || || || || || || || || || | || | || ||| Sbjct 5393917 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5393976 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | || | ||||||||||| Sbjct 5393977 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5394036 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| || || || ||| Sbjct 5394037 ATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTT 5394096 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 5394097 CCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931963790122