Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq472 282 8e-71 seq328 154 3e-32 seq594 91.5 3e-13 >seq472 Length=2253382 Score = 282 bits (312), Expect = 8e-71 Identities = 875/1328 (66%), Gaps = 72/1328 (5%) Strand=Plus/Plus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| |||| || | |||||| || || || ||||| | ||| | ||||| ||| || Sbjct 817987 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 818046 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| || ||||| || ||||| ||||| ||| || || ||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || |||| ||| || || | | ||||||| | |||| | | ||| ||| Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 818166 Query 213081 CAGTCCCATCTGCCAGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAG 213137 |||| ||| ||| ||| ||| ||||| ||||||||| || |||||||| Sbjct 818167 CAGTTCCA---------CAGATCCGTCGGTTCCTT---GTTCCACATCTCGTACTGCAAG 818214 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC-CTTGGCCAG 213196 ||||| |||||||| || ||||||| ||| | ||| || |||| ||| ||||| Sbjct 818215 ATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCAT-CTCGAGCGGCCAA 818273 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 ||| ||| ||| | ||| || |||||||||||||||| ||||| | || ||||| Sbjct 818274 CTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTT 818333 Query 213257 CTTGGCCTC------TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 | ||||| | | ||| || |||||| || |||| |||| |||| Sbjct 818334 TTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGAT------GAACGCATCGGCCAT 818387 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTC 213367 ||||| || ||||| ||||| || ||||| | || || || ||| ||| |||| Sbjct 818388 GCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT--AGC-CTCCGG 818444 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 || ||| || | ||| || ||||| ||||| || ||||| || | || | ||| Sbjct 818445 CACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGAC 818504 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAG 213484 | ||| | | | | | |||| ||| ||| |||||| || Sbjct 818505 TTCCTTCAGCT--TTGCAAAGTCATACGT----TTTGTCTTGCTTTACAAACATGTTCAA 818558 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACC---TCCTGAGAGTCTGTGTACTCCATGAT 213541 |||||| |||||| ||||| || || ||| |||| || | |||||||| || Sbjct 818559 GGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGA---CGAGTACTCCACAAT 818615 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGAC-TTTGCG- 213599 ||| ||||||| |||| ||| ||||||||| | ||||| ||||| || ||| || Sbjct 818616 CTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGA 818673 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||| || ||||||||| |||||||| || ||||| || | ||| || | | ||| Sbjct 818674 TTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATC 818733 Query 213660 TGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 ||| || | |||| ||||| ||| |||| | | ||| | | | |||||| Sbjct 818734 GCAAACCACAGAT-CCTGCGCCTTCACCTGCCGCAT-AAAGCGACCCTCTT--TCTCGTA 818789 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGAC-AGG 213774 | ||| |||| | ||| || | ||||||| ||||| || || |||| | Sbjct 818790 CCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAG---GTGTCCGATAGCCCGGGACAATC 818846 Query 213775 ATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCC 213833 |||||| ||||| |||||||| | | || ||| || | |||||||||||||||| Sbjct 818847 GTGCGGG-CACATCAGGCTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTCC 818904 Query 213834 GGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTG 213893 || | ||| || ||| |||| ||||| | | ||| ||| || | |||||| Sbjct 818905 GGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTC 818964 Query 213894 CGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 |||||| ||||| || || || || | ||||||||||| | |||||||| || || Sbjct 818965 TTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCT 819024 Query 213954 CCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGG 214010 || |||| | ||||| ||||| || || || ||| ||||| ||| |||||| Sbjct 819025 CCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGC 819084 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | || ||||| ||||| || ||||| || || | || |||| || || | Sbjct 819085 ATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGG 819144 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | | || | || || ||||||||||| |||| || || | ||| || || || Sbjct 819145 ATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTC 819204 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || |||||| | ||||| || || | | | ||| || ||||||| ||| Sbjct 819205 AGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAA 819264 Query 214191 AGCTGGGG 214198 |||||||| Sbjct 819265 AGCTGGGG 819272 >seq328 Length=4755327 Score = 154 bits (170), Expect = 3e-32 Identities = 283/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | |||| || || |||| ||||| | ||||| || ||||||||| | Sbjct 1649627 CAGCAAGCGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCCAG 1649568 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | ||| |||| ||||| || || ||||||| ||| ||| | || || || | | Sbjct 1649567 CATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGAT 1649508 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || || || | ||| | |||| | | || ||| Sbjct 1649507 GATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGA---ACATCAGGCA 1649451 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| |||||||| || ||| ||| |||| |||||| ||| || Sbjct 1649450 GGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCC 1649391 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| || || ||||| || ||||||||| Sbjct 1649390 CGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGAT 1649331 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || ||||| || || || ||| || || || |||||| ||||| Sbjct 1649330 ACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCTCGAGAT 1649271 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||| |||||||| || |||||| ||| | ||| |||| ||| || ||||| Sbjct 1649270 CCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1649217 Score = 125 bits (138), Expect = 1e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||||||| || || || |||||||| ||||||||| | ||||| Sbjct 1649054 GTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1648995 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||| || | ||| | |||| ||||||||| || || || || || || Sbjct 1648994 CGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGA 1648935 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| || || || || ||| ||||| ||| | | | || | | Sbjct 1648934 CGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGGCGTTCGCTCGGTTTCAGCGACTC 1648875 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| ||| | ||| ||| ||| || || |||||||| ||||||||||| || Sbjct 1648874 CCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCCACCGTCCAGAAGGAAGC 1648821 >seq594 Length=1254422 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| ||||||||| | |||||| || || || ||| ||||| Sbjct 929777 CTTCAGCTCCTTCACCCGGTCCTCCAGCTTGGAGATGCGCTCGAGCTTCCGCTTCCGGCA 929718 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || ||| ||||||||| ||||| Sbjct 929717 CTTGGAGGCGGCGACCCGGTTCCGCAGCCGCTTGCGCTCCAGCTTGATGCGCTCCTGCGA 929658 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 929657 CTCCATGTCGATCGG 929643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518663989760