Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq472 197 3e-45 seq328 129 1e-24 >seq472 Length=2253382 Score = 197 bits (218), Expect = 3e-45 Identities = 653/997 (65%), Gaps = 40/997 (4%) Strand=Plus/Plus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GC 221568 ||||||| ||||| || ||||| ||||| |||||||| | | | ||||| ||| || Sbjct 818380 TCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGA-GCGCTTAGC 818438 Query 221569 TTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTT 221628 || ||||||||||| | ||||| || || | ||||| || || | || | | || Sbjct 818439 CTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTT 818498 Query 221629 AACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTC 221688 | | || || ||||||| || | || || ||| || | || Sbjct 818499 AGCGACTTCCTTCAGCTT--------TGCA----AAGTCATA--CGTTTTGTCTTGCTTT 818544 Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGT 221748 ||||| ||| | ||| | |||||| || || || || ||||| ||||| | Sbjct 818545 -ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGA 818603 Query 221749 ATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATT 221808 |||| | ||||| || || | |||| || |||||||| || | | | || || Sbjct 818604 GTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT 818663 Query 221809 AGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGC 221868 | || |||||| ||| |||||||| ||||| | || |||| || |||| ||| | Sbjct 818664 ACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGA 818723 Query 221869 CACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGG 221927 | | ||| ||| || || ||| || ||||| || | | | |||||| Sbjct 818724 TTCGATGATCGCAAACCACAGATC-CTGCGCCTTCACCTGCCGCATAAAGCGACCCTCTT 818782 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 ||| | ||||| || || ||| | || |||| ||| || | | || || || | Sbjct 818783 TCT---CGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGG 818839 Query 221988 GACACCTG-GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046 |||| | ||||| |||||||| ||||| | ||| | | || | ||||||||| Sbjct 818840 GACAATCGTGCGGG-CACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAAC 818898 Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGT 222104 |||||||| ||||| || || | ||| | || | || ||| | ||||||| |||| Sbjct 818899 AGGTCCGGTATCCAGAGTGCGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGG 818956 Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 |||||||| ||||||| | |||||| || || ||| | ||||||||||| ||||||| || Sbjct 818957 TGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGG 819016 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGA 222224 | | || || || |||||||||||||||||||| || || || | |||| ||| Sbjct 819017 CGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGA 819076 Query 222225 TGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGC 222284 ||| || |||| ||||| ||||| ||| ||||| || || ||||||| || Sbjct 819077 CGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGAGATGTACGTTCCCT 819136 Query 222285 CGGCCCTCAGGTTACTG-GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGG 222341 || | || ||| | ||| || ||||| |||||||| || || || | || Sbjct 819137 TCGCGC---GGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGG 819193 Query 222342 CGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAA 222401 | || ||| || ||||| ||||||||| || || || | | ||| ||| | Sbjct 819194 CACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGA 819253 Query 222402 AACAAGACGACATCT---GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGT 222458 | || ||||| | || || | |||| | | || ||||| || || ||||| Sbjct 819254 AGCAGGACGAAAGCTGGGGACGCTGCGTGG--CCGCCG-CAAACATAGTTGGCGAGGCGT 819310 Query 222459 GTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 | |||||||| | | |||| ||||| ||| ||||| Sbjct 819311 GGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTC 819347 >seq328 Length=4755327 Score = 129 bits (142), Expect = 1e-24 Identities = 185/260 (71%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 |||||| || ||||| ||||||||| | || || | ||| |||||||| | Sbjct 1649199 AGAGAGTTC--CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGATT 1649256 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| |||| |||||| ||| ||| || | |||||||||||| | || || || | Sbjct 1649257 GGGCGCTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCTTTCG 1649316 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| || ||||| ||||| ||||||||| || || || ||||||||||| ||| || Sbjct 1649317 CTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGC 1649376 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || || ||| || |||||||| ||| | ||||| || || | Sbjct 1649377 GTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGC 1649436 Query 26015 ACAGAGATTTTGCCTGCCTG 26034 || | || |||||||||||| Sbjct 1649437 ACTGCGACTTTGCCTGCCTG 1649456 Score = 118 bits (130), Expect = 2e-21 Identities = 166/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569 |||||| | |||||| |||||||| ||||||||||| | | |||| | |||| | || Sbjct 1648829 CTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACTGGGAGTCGCTGAAACC 1648888 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| | || || | ||||| |||| |||||||| || || || ||||| Sbjct 1648889 GAG--CGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTATC 1648946 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGT 25687 ||||||||||||||| || | |||| | ||| |||||| ||| |||||| | Sbjct 1648947 GTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC--GGAGGCGCGCT 1649004 Query 25688 GTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 | |||||||| |||||||| || || |||||||||||| ||| |||| Sbjct 1649005 GCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTA 1649053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830704780160