Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1104 111 1e-18 seq472 89.7 3e-12 seq358 87.8 1e-11 >seq1104 Length=7559990 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || ||| || | ||||| || | || || Sbjct 5394132 ACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGT 5394191 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 5394192 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 5394251 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||||||||| | || | || ||| | Sbjct 5394252 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAA-CTTCCA 5394310 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| ||||| || |||||||| || Sbjct 5394311 GAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTG 5394350 >seq472 Length=2253382 Score = 89.7 bits (98), Expect = 3e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 || ||||| || ||||||||||| ||||||||| | |||||||| || |||| ||| Sbjct 1598102 GATGAAGACATCAAAAAAGCTTACCGAAAATTAGCGCTAAAATATCACCCAGACAAAAAC 1598161 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTT-TC 299232 ||| |||| || || |||||||||||| || | | | || || | | | || || Sbjct 1598162 AAATCACCTGGGGCAGAGGAAAAGTTTAAAGAAGTTGCTGAAGCATA-CGAAGTGTTGTC 1598220 Query 299233 AGATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| | ||| ||| | |||||||||||||| ||||| |||||||| Sbjct 1598221 CGATAAGAAGAAACGTGAAATGTATGATAAATTTGGTGAAGATGGATTAAA 1598271 >seq358 Length=35138 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || || || | || || ||||||||| | || || || | || || || Sbjct 1013 GATTTTTCCTCGCCTAACGTAGCGAAAGAAATGCATGTCGGTCATTTACGTTCGACCATC 1072 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| || ||||| || | | |||| | ||| || || | | || || Sbjct 1073 ATTGGTGATTCAATTTGTCGATTTTTGGAATATCTCGGACACGATGTGCTTCGTATTAAC 1132 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| || || |||||||| |||||||||||||||||||| Sbjct 1133 CATATCGGAGACTGGGGAACGCAATTTGGTATGTTAATTGC 1173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268127125649672