Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1104 313 3e-80 seq405 293 3e-74 seq250 154 2e-32 seq261 129 8e-25 >seq1104 Length=7559990 Score = 313 bits (346), Expect = 3e-80 Identities = 979/1511 (65%), Gaps = 19/1511 (1%) Strand=Plus/Minus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || |||||||| | || ||||| || ||| | || || || || ||||| ||| | Sbjct 3594675 GTGGAGATTATTGCCAACGACCAGGGCAACAGAACCACACCGAGCTATGTTGCGTTTTCG 3594616 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||| | || || || || || || ||| || |||||||| | ||| Sbjct 3594615 GACACGGAGCGCCTCATCGGTGACGCGGCCAAGAACCAGGTGGCCATGAACCCGACCAAC 3594556 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| |||||||||||||| || || |||||||| ||| |||| | | Sbjct 3594555 ACCATCTTCGACGCGAAGCGTCTGATCGGCCGCAAGTTCGACGATCCCGCGATCCAGGCC 3594496 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCT----GATAAGCCTATGAT 195594 || || ||| ||||| | | || || || || | | | ||||| | ||| Sbjct 3594495 GACATGAAGCACTGGCCATTCGAGGT-------GGAGTCGATCGAGGGCAAGCCAAAGAT 3594443 Query 195595 TAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCG-TCTATGG 195653 || || | | || |||||||| || ||||| || | | | || |||| Sbjct 3594442 CGCGGTCGAGTACAAGGGCGAGAAGAAGTGCTTCT-TCCCGGAGGAGGTCAGCTCGATGG 3594384 Query 195654 TGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAG 195713 || ||| ||||||||||| || || ||| | | | |||| || || |||| | || | Sbjct 3594383 TGCTGACCAAGATGAAGGAAACGGCCGAAGCCTACCTGGGCAAGACGGTGACGAACGCCG 3594324 Query 195714 TTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTG 195773 | | || || || || ||||||| || || || || |||||||| ||||| || | | Sbjct 3594323 TCATCACCGTGCCAGCCTACTTCAACGACTCGCAGCGCCAGGCGACGAAGGATGCCGGTA 3594264 Query 195774 CTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTT 195833 | || |||| || ||| || | || ||||| || || || ||||| || || || | Sbjct 3594263 CCATCTCGGGACTGAACGTGCTGCGCATCATCAACGAGCCGACCGCGGCCGCCATCGCGT 3594204 Query 195834 ATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 | |||||||||||||| | | || || || || ||||||| |||||||| || | Sbjct 3594203 ACGGTCTGGACAAGAAGACCGCCGGTGAGCGCAACGTGCTGATCTTCGATCTCGGCGGCG 3594144 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | || || || || || | || || || | ||| || ||||| || ||| | || | Sbjct 3594143 GCACCTTCGACGTGTCGATCCTGTCCATCGACGATGGCATCTTCGAGGTCAAGTCGACCG 3594084 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG 196013 | || || || ||||| || ||||| || ||||| ||||| | || || | Sbjct 3594083 CCGGAGACACCCATCTGGGCGGTGAGGACTTCGACAACCGTCTGGTGAACCACTTCGCAC 3594024 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 | || ||| || ||| | ||||| ||| | || || | || || || || | Sbjct 3594023 AGGAATTCAAGCGCAAGCACAAGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGAC 3593964 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTG 196133 | | || || || || || || || || || ||||| || || | || | | ||| Sbjct 3593963 TGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTG 3593904 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 |||| |||||| |||| || |||| |||||||| || | || || || || || || | Sbjct 3593903 AGATCGATTCGCTGTTCGAGGGAACCGACTTCTACACCTCGATCACGCGCGCCCGCTTCG 3593844 Query 196194 AAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTG 196253 | ||| | ||| | ||| |||| | | ||||| || || || | | || || | Sbjct 3593843 AGGAGCTGAACGCCGATCTGTTCCGCTCGACGATGGAGCCGGTCGAGAAGGCGCTGCGCG 3593784 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 |||| |||||||| ||| | | | | || || || || ||||| ||||| || || | Sbjct 3593783 ACGCCAAGATGGACAAGGCGAGCATCCACGACATCGTGCTGGTGGGTGGATCGACGCGCA 3593724 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGA 196373 | |||||| | || || |||| ||||||||| || || || ||||| | | Sbjct 3593723 TCCCGAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTA 3593664 Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 |||||||||| || || || || || ||||| ||||| ||||| || || || || | Sbjct 3593663 TCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCT-GCA--CG 3593607 Query 196434 TTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 ||||| | | || || ||||| ||||| || || || | || | || || | Sbjct 3593606 GCGACAAGTCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTCGCTCG 3593547 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 || | || || ||||| || || ||| | | || | | ||||| || || |||| Sbjct 3593546 GTATCGAGACGGCGGGCGGCGTGATGTCGGTGCTGATCAAGCGCAACACGACCATCCCGA 3593487 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | ||| || || || | ||||| || || || || || || || | || || | Sbjct 3593486 CCAAGCAGACGCAGACGTTCACCACGTACTCGGACAACCAGCCGGGCGTGCTGATCCAGG 3593427 Query 196611 TATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGA 196670 | | || || || ||| || | ||||||||| | || || || | ||||| ||| Sbjct 3593426 TGTTCGAGGGCGAGCGCGCCATGACGAAGGATAACAACCTGCTCGGCAAGTTCGAGCTGA 3593367 Query 196671 CGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACG 196730 || || || | ||||| | || || || ||||| | || ||||| || |||| Sbjct 3593366 GCGGCATCCCGCCGGCACCGCGCGGCGTGCCCCAGATCGAGGTGACGTTCGACATTGACG 3593307 Query 196731 CAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTG 196790 | || || || || ||||| || || || ||| | | ||| | ||||| Sbjct 3593306 CGAACGGTATCCTGAACGTGACGGCGCTCGAGAAGTCGACCAACAAGGAGAACAAGATCA 3593247 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850 || || || |||||||| || || |||||||| || || || ||||| | || | Sbjct 3593246 CCATCACGAACGACAAGGGCCGCCTGAGCAAGGAGGACATCGAGCGCATGGTGAACGAGG 3593187 Query 196851 CGGAAAAGTAC 196861 | || |||||| Sbjct 3593186 CCGAGAAGTAC 3593176 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG--T 171919 ||||| |||||||| || || || || || ||||| ||||||||||| || || ||| | Sbjct 5397225 ATGCAGATCTTTGTAAAGACGCTAACCGGGAAAACGATCACCCTCGATGT-GA-TCGCTT 5397168 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || | |||| ||| ||| ||| || | ||||||||| |||| |||| Sbjct 5397167 CGGAAACGGTTTTGGACATTAAAAGCAAAATTGAACAACGTGAAGGCATTGCACCGGATC 5397108 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| ||| | || ||||| ||||||||||| || || || || | | | | || |||| Sbjct 5397107 AGCAGCGAATCATCTTTGCCGGTAAACAGCTCGATGACGGTCGGATCATATCCGACTACA 5397048 Query 172040 AC 172041 || Sbjct 5397047 AC 5397046 >seq405 Length=2887246 Score = 293 bits (324), Expect = 3e-74 Identities = 816/1240 (66%), Gaps = 14/1240 (1%) Strand=Plus/Minus Query 195644 TCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTG 195703 || || |||||| ||| ||||||||||| || || ||| | | | |||| | ||||| Sbjct 1062375 TCCTCGATGGTGCTGACCAAGATGAAGGAAACGGCCGAAGCATACCTGGGACACTCTGTG 1062316 Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 || |||| || | || || || || ||||||| ||| || |||||||| || ||| Sbjct 1062315 AAGAATGCGGTCATCACGGTTCCAGCGTACTTCAATGACAGCCAGCGACAGGCCACGAAG 1062256 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823 || || | ||| || || || | ||| || | || ||||| || || || ||||| Sbjct 1062255 GATGCCGGTGCGATCGCCGGGTTGAACGTGCTGCGCATCATCAACGAGCCGACGGCGGCC 1062196 Query 195824 GCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGAT 195883 || ||||| || || ||||||||||| || || || || || ||||||| ||| Sbjct 1062195 GCCATTGCGTACGGGCTGGACAAGAAGGGGGCCGGCGAGCGGAACGTGCTGATCTTCGAT 1062136 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 ||||| || || || || || || || | |||| || || | ||||| || || || Sbjct 1062135 CTCGGCGGCGGCACCTTCGACGTGTCGATCCTCACGATCGAGGACGGTATCTTTGAGGTG 1062076 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGT 196003 ||| | || || || || || ||||| || || || || || || || | | Sbjct 1062075 AAGTCGACGGCCGGCGACACCCATCTCGGCGGCGAGGACTTTGACAACCGCATGGTGTCG 1062016 Query 196004 CA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGC 196062 || |||||| || |||||| || ||| | ||||| || ||| | | || | || Sbjct 1062015 CACTTTGTC-GAGGAGTTCAAGCGCAAGCACAAGAAGGACATTACGAGCAACAAGCGCGC 1061957 Query 196063 TCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCA 196122 || || || | | || || || || || || || || || || || | | | || Sbjct 1061956 GCTGCGCCGATTGCGCACGGCTTGCGAGCGGGCAAAGCGCACGCTATCCGCGTCCACCCA 1061897 Query 196123 AACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCG 196182 ||| | ||||| || ||| ||| || || || || ||||| || | || || | Sbjct 1061896 GGCAAGCATCGAGATCGACTCGCTGTACGAGGGCATCGATTTCTACACCTCGATCACGAG 1061837 Query 196183 TGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACC--TGTTGAA 196240 || || || || ||| | || || || |||| | | ||||| || ||| ||| Sbjct 1061836 GGCCCGGTTCGAGGAGCTCAATTCGGACCTGTTCCGCGACACGATGGAGCCGGTGTCGAA 1061777 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || || || |||||||| ||| | | | | || || || || || || Sbjct 1061776 GGCG--CTGCGCGATGCCAAGATGGACAAGGCCAGCATCCACGACATCGTGCTCGTCGGT 1061719 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| ||||| ||||| ||| | || || |||| |||||||| || || Sbjct 1061718 GGATCGACCCGCATTCCCAAGGTGCAGAAGCTGCTGCAGGATTTCTTCAACGGCAAGGAG 1061659 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 | |||||| ||||||||||||| || || || || || || || ||||| ||||| ||| Sbjct 1061658 CTGAACAAATCGATCAACCCGGACGAGGCCGTCGCGTACGGGGCCGCCGTGCAGGCCGCT 1061599 Query 196421 ATTCTCTCAGGTGTTGACA-ATAATAA--CGTCCAAGATCTTCTGCTACTTGATGTTGCA 196477 || || ||| | ||||| || || ||||| ||||| ||||| || || || | Sbjct 1061598 ATCCT-GCAG--GGTGACACATCGGAAGCGGTCCAGGATCTGCTGCTGCTGGACGTGACG 1061542 Query 196478 CCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAAC 196537 ||| | || ||||| | ||||| || || || || ||||| | || | | ||| Sbjct 1061541 CCCCTGTCGCTGGGCATCGAAACGGCCGGCGGCGTGATGACGGTGCTGATCAAGCGCAAC 1061482 Query 196538 ACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGT 196597 || || || ||||| ||| || ||| || | || || || || || || || || Sbjct 1061481 ACCACGATCCCGACGAAGCAGACGCAAACGTTCACCACCTACTCGGACAACCAGCCGGGC 1061422 Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGA 196657 || | ||||| || | ||| || || ||| || | ||||| ||| |||| || || Sbjct 1061421 GTGCTGATTCAGGTGTTTGAGGGTGAGCGCGCCATGACCAAGGACAACAATCTGCTGGGC 1061362 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGC 196717 | ||||| ||| || || || | ||||| | ||||| ||| ||||| | || | Sbjct 1061361 AAGTTCGAGCTGAGCGGCATCCCGCCGGCACCGCGCGGTGTGCCAAAGATTGAGGTAACC 1061302 Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 || ||| | ||||| || || ||||| ||||| | || |||| | | | ||| || Sbjct 1061301 TTTGATTTGGACGCCAACGGTATTCTGAACGTATCGGCGAAGGAAATGAGCACCGGC-AA 1061243 Query 196778 TCTGAAAAG-ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 |||||| || ||| || || |||||||| || || |||||||| || || || Sbjct 1061242 GGAGAAAAGCATCACGATCACGAACGACAAGGGCCGCCTGAGCAAGGAGGACATCGATCG 1061183 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 ||||| | || ||||| |||| | | | || |||||| Sbjct 1061182 GATGGTGAACGAGGCGGAGAAGTTCCGCAACGAGGACGAG 1061143 >seq250 Length=5469655 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || |||||||| || || || || || ||||| || ||||| ||| | || Sbjct 4641020 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 4640961 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||||||||| || |||||| Sbjct 4640960 GACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 4640901 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || ||||| || || ||| | || |||||| Sbjct 4640900 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAAC 4640841 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| ||||| || || || || || || || | || || |||||| Sbjct 4640840 ATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGT 4640793 >seq261 Length=5803121 Score = 129 bits (142), Expect = 8e-25 Identities = 246/362 (68%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 || || || || || ||||| | |||||| | ||||||||||| || || ||| | Sbjct 68993 TTCGCGCCGGAGGAGATTTCCGCGATGGTGCTAGGCAAGATGAAGGAAACGGCCGAAGCG 68934 Query 195686 TTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 | | |||| || | |||| |||| || || || || || || ||||||| ||| | Sbjct 68933 TACCTGGGCAAGAAGGTGACCCATGCCGTCGTTACCGTGCCGGCGTACTTCAACGATGCG 68874 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || |||||||| |||||||| | | || || ||||| | | || ||| Sbjct 68873 CAGCGCCAGGCGACGAAGGACGCCGGAACGATCGCCGGTCTGGTGGTGATGCGCATCATC 68814 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || ||||| || || ||||| || ||||||||| ||||||| || || Sbjct 68813 AACGAGCCGACTGCGGCCGCCATCGCTTACGGACTGGACAAG---AAGGACGGCGAGAAG 68757 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || || | | || ||||| || || ||||| || || ||||| || || | || || Sbjct 68756 AACGTGCTCGTGTTCGATCTGGGCGGCGGTACCTTCGACGTCTCGCTGCTGACCATCGAC 68697 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 || | ||||| || ||| || ||||| || ||||| || || ||||||||| Sbjct 68696 AACGGCGTGTTCGAGGTGGTGGCCACGAACGGTGACACCCATCTGGGCGGCGAAGATTTC 68637 Query 195986 GA 195987 || Sbjct 68636 GA 68635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657852416938080