Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq328 127 2e-23 seq283 123 3e-22 seq294 122 1e-21 seq1 120 4e-21 seq438 118 1e-20 seq472 109 7e-18 seq327 104 3e-16 >seq328 Length=4755327 Score = 127 bits (140), Expect = 2e-23 Identities = 163/222 (73%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| |||| ||| || ||||| ||||| |||||| Sbjct 1649431 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 1649372 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||| ||||| ||| ||| || || ||| ||||| ||||| || || || ||| Sbjct 1649371 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAA 1649312 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355 ||| | || ||||||| ||||| | | ||| |||| | |||||| |||| ||| Sbjct 1649311 GCC-ACGACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGC 1649259 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||| || ||||| | |||| |||||| ||| |||||||| Sbjct 1649258 CCAATCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1649217 Score = 105 bits (116), Expect = 8e-17 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 868789 CTTTTCGCATCCGAGCGACGCG-AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACA 868847 ||| ||||| || ||| || | |||| ||| ||||| |||||||| |||||||| ||| Sbjct 1649648 CTTCTCGCAGCCCAGCT-CGAGCAGCAAGCGATCGGCCACAAACTCAATGTACTGCGACA 1649590 Query 868848 TGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCT 868907 | || | ||||||||| | | |||||||||| | || ||| ||||| | || Sbjct 1649589 TCAGATCACAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCT 1649530 Query 868908 CGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGA 868964 ||||| ||| || ||| |||||||| | | |||| || ||| ||||| | | Sbjct 1649529 CGATCAGGACCGCATCGCGGATGATCTCCGT---CACGCGCTCCTTCGACGGCTTCTGCA 1649473 Query 868965 CGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCAACCCT 869008 | || | || | | ||||||||||||||||||||||| |||| Sbjct 1649472 CCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 1649429 >seq283 Length=5471375 Score = 123 bits (136), Expect = 3e-22 Identities = 212/297 (71%), Gaps = 17/297 (6%) Strand=Plus/Plus Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCAT 733075 ||| || |||||| |||| |||| ||| ||| | ||||||| ||| |||| | | Sbjct 4914399 GTGATGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGT-GCGCTCGGT 4914457 Query 733076 GCGCCAGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGG 733134 ||| | |||| || | |||||||| | ||||||||||||| || || || || ||| Sbjct 4914458 GCGT-ATCCCGCAGATCGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTGC 4914515 Query 733135 G-----CAGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCC 733189 | ||| | | ||| ||||||||||| | || | | ||| ||| ||||| Sbjct 4914516 GGTATACAGTAT---CGCCAG-GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCC 4914568 Query 733190 CGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGA 733249 |||||| | || |||||||||||||||||||| || |||||||| || | || |||| Sbjct 4914569 GGACATCATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGA 4914628 Query 733250 GGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 | | ||| ||||||| ||| || | ||||| | |||||||||| |||||| || Sbjct 4914629 GTGCATCCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 4914685 Score = 87.8 bits (96), Expect = 2e-11 Identities = 206/303 (68%), Gaps = 15/303 (5%) Strand=Plus/Plus Query 732342 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTC 732401 |||||| |||| | || ||| | | || | || | |||||| ||||||||||||||| Sbjct 4913760 ACGCACTGCGAGATCCATCCGGCGATGATTTTGGGCGTCTGCGCTTCCATCATCCCGTTC 4913819 Query 732402 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAG 732461 | | ||||| ||| ||||| |||| |||||| | || ||||| |||||| || | Sbjct 4913820 CCGGATCACAATCAGAGTCCGCGTAACACCTACCAAAGCGCTATGGGTAAGCAG-GCGAT 4913878 Query 732462 GCCGTCGTGTCGCTCAACGCCGACCACG---CCATCGACACGGTGTCGCACGCCCTGTGC 732518 | | |||| ||| | ||||| ||| |||||| | |||||| || | | Sbjct 4913879 G--GGTGTGTACATCACGAACTTCCACGTGCGCATGGACACGCTCGCGCACGTGCTTTAC 4913936 Query 732519 TACCCGCAGGTGCCGCTGGTGCAGAC-CG--CCATGGAGGACGTCATCGGCGCCACGCGC 732575 |||||| | |||||| ||| ||| || | |||||| | || |||| || | | Sbjct 4913937 TACCCGATGAAGCCGCTCGTGACGACGCGTTCGATGGAGTA--TCTTCGGTTCCGTGAG- 4913993 Query 732576 CTCCCGATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCC---CTACAACCAGGAG 732632 || ||| || ||| || |||||||||| || || || | ||||||||||||| Sbjct 4913994 CTGCCGGCCGGTATCAATTCGATCGTGGCCATCCTGTGCTACACGGGCTACAACCAGGAG 4914053 Query 732633 GAC 732635 ||| Sbjct 4914054 GAC 4914056 >seq294 Length=4758485 Score = 122 bits (134), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| | | | ||| ||||| || |||||||||||||| | || Sbjct 1386686 GCTTGGCCAGCTCGCCGGGGAGCAACAGTCGCACCGCCGTCTGGATCTCGCGGGACGTGA 1386627 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| || || | |||| || |||| | Sbjct 1386626 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCTTCCGCCGCGATCCGCTCGAAGA 1386567 Query 1254463 TGTCGTTGAC---------AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCA 1254513 ||||||| || || |||||||| ||||| |||| ||| ||||| Sbjct 1386566 TGTCGTTCACNNNNNNNNNNAAGCTGTTCATGATGCTCATCGCCTTGGAGGAAATGCCGG 1386507 Query 1254514 CGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||||||||| ||||||||||||||| Sbjct 1386506 TGTCCGGGTGCACCTGCTTCAGCACCTTGTAGATG 1386472 >seq1 Length=16348944 Score = 120 bits (132), Expect = 4e-21 Identities = 200/283 (71%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 1573910 GGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGGGCGCGGCCGCCGACG 1573968 ||| || || |||| |||| || ||||| || |||| || |||| | | ||| || Sbjct 13832182 GGGTAAAACGACGACCATCCTCTGCCTGGCACGCATCCTGCTCGGGCCCAACTTCCG-CG 13832124 Query 1573969 AGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCA 1574028 ||||||||||||| || ||||| || |||||||||| |||| || || |||| | | Sbjct 13832123 AGGCCGTGCTCGAGCTGAACGCTTCCAACGAGCGCGGTATCGATGTGGTACGCAGCAAGA 13832064 Query 1574029 TCAAGCACCACGC-CTCCAAGAGG-ATCGACCTGCCGCCCGGACGCCACAAGGTGATCAT 1574086 |||| || | || ||| | || ||||| | ||| || |||||| | | || Sbjct 13832063 TCAAAATGTTTGCACAACAGAAGGTAACG--CTGCCCCGCGGCCGGCACAAGATTGTAAT 13832006 Query 1574087 CCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 ||| ||||| || || || | ||| || |||||||||||| |||||| || ||||| Sbjct 13832005 CCTGGACGAAGCGGATAGCATGACGGAGGGGGCCCAGCAGGCGCTGCGGCGAACGATGGA 13831946 Query 1574147 AAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACG 1574189 || | | |||||| ||||||||||| || || || || ||| Sbjct 13831945 AATCTATAGCAACACAACGCGCTTTGCGCTAGCCTGTAATACG 13831903 >seq438 Length=11078434 Score = 118 bits (130), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 ||||||||||| |||||| ||||||| || || | || || ||| |||| Sbjct 2657525 AAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGCACC 2657466 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| ||||||| ||||| ||||| || ||||||||| ||||| || | Sbjct 2657465 CTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTGACC 2657406 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || || Sbjct 2657405 TGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGTTC 2657346 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 2657345 AACATCAAGAACG 2657333 >seq472 Length=2253382 Score = 109 bits (120), Expect = 7e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 819045 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 819104 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| || || | | ||| | || ||||| | |||| || | || Sbjct 819105 TATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 819164 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||||||| || || || || ||||| || |||||||||||||||||||| Sbjct 819165 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 819224 Query 1630245 GAT 1630247 || Sbjct 819225 AAT 819227 >seq327 Length=13998812 Score = 104 bits (114), Expect = 3e-16 Identities = 338/511 (66%), Gaps = 23/511 (5%) Strand=Plus/Plus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| |||| || ||| | |||| |||| ||||||||||| ||| || ||||| Sbjct 13241849 AGGTCGATTTTTGAGTCCTCCTCACTGGACGACATCTTGCCGC---CGGCCAGTCCCGGG 13241905 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCG 1852158 | | || || | || || | ||||| || || || |||||||| | | || Sbjct 13241906 ATCATTGGATTCATAAGATGAATACGCTTGGCGTAACCCAGCTGCGGCAGGTATTTCTCG 13241965 Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 || |||| || || |||||||| || ||| || ||||||||||| || | || | Sbjct 13241966 -GCGAAGGTGAAAATTTTGCGCTGATCCACCCCACCGAACTGGGCGTCCACCTTCAGATA 13242024 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTC 1852278 || |||||| || ||||||| |||||| || | | || ||||| | | || Sbjct 13242025 CTCCTCGTCCAGCGCCTGCAGACCCGGGTACAGGATGCCCGACATCAGCGGAT---GCTC 13242081 Query 1852279 CA---TCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGC 1852332 || ||| ||||||| || | |||| || ||| ||||| |||| |||| || Sbjct 13242082 CACCTGCTTCACCACCTCCGCTCCCGCCTTCTTGGCGTCGTGC---TGCGTCACGACCGA 13242138 Query 1852333 CGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGC 1852390 | | ||||| | || |||| ||| | || || || ||| || || ||||||| | Sbjct 13242139 GGACAACCGGTACACATCCAGCGTGTA--CTCCTTCGACAGCTGATAGTCCGTGCCGCAC 13242196 Query 1852391 ACAAACTCGAGTCCGCCCAGCGGCACGCCGA-TGTGCTGGAGCATGGCCTTGATGGCAAA 1852449 || |||| || | |||||||||| |||| | | | ||||| |||||||| | Sbjct 13242197 ACGAACTTCAGCTTGTCCAGCGGCACTCCGAGCGAGGT-AAGCATCGCCTTGATAACCGC 13242255 Query 1852450 CTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTG 1852509 |||||| | | || | | || ||| |||||||| ||| |||||| |||| Sbjct 13242256 CTCGTAGTACTTGGTGCGTTCCTTGAGCAGCGACCACGGCGCCTTCATGTTGTCCAGGTA 13242315 Query 1852510 GGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 |||||||| || ||||| |||||| | ||| Sbjct 13242316 GGCGTGCAGATCTGCAAACAGGATCGTTACC 13242346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107039573474838