Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq472 412 3e-110 seq250 136 4e-27 seq1104 134 1e-26 seq327 111 1e-19 >seq472 Length=2253382 Score = 412 bits (456), Expect = 3e-110 Identities = 1185/1793 (66%), Gaps = 55/1793 (3%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 || || || ||||||| || |||| |||| || || || | |||||| ||||| || Sbjct 817648 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATGCCA 817707 Query 138214 GTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| || ||||| |||| || | || | || ||||| || || | || | || Sbjct 817708 GTTTTCAATCCCATCTTCC-AGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTTTGG 817766 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 | ||| | ||||| |||||||| ||||||||| || ||||| ||||| ||| Sbjct 817767 CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCGGC 817826 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| || || | |||| |||||||| || || ||||| || || ||||| | Sbjct 817827 CATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAATTTC 817886 Query 138393 TCGCGGTATTGTTGCAATATTTTGAAT-GCTCCC--GTTGGCCGCAATGATGCGATTTCT 138449 ||||||| | ||||| ||||| || | ||| ||||| | ||| | || | | | Sbjct 817887 CTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAAT--TTCGTTCT-T 817943 Query 138450 CATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGAC 138509 |||||| | ||||| || ||| |||| || | | |||| ||| | || Sbjct 817944 CATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCACCAC 818003 Query 138510 CTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGA 138569 ||| || || || | || || || | | ||||| ||| ||| | ||||| ||||| Sbjct 818004 CTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACGA 818063 Query 138570 TTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGA 138629 ||| ||||| || ||||| || ||||||| || |||||||| |||| || || || Sbjct 818064 TTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCGA 818123 Query 138630 ATTCCGTAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 ||| || | ||||| |||| || |||||| | | | ||||| ||||| ||| Sbjct 818124 ATTGCGAATGCCGTG---CTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATC 818180 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | |||| ||||||||||| |||||||| || || ||| || | |||||||| || Sbjct 818181 CGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCTC 818240 Query 138747 GTACGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 ||||| ||||| || | ||| || |||||||| |||||| || ||||| || | Sbjct 818241 GTACGTCTCGTACGGTCC-ATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGT 818299 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 |||| || |||||| || || ||||| ||| | | ||||| |||| |||||||| Sbjct 818300 AGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGAT 818359 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 ||| | || ||||||| ||||||| || |||||||| | |||| || | |||| Sbjct 818360 AGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGC 818419 Query 138926 GCAGATTTGA-CGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGT 138982 ||| ||| || ||||| | || || | ||||| || || ||||| |||||||||| Sbjct 818420 GCATATTGGAGCGCTT---AGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGT 818476 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTT-CAAAATCGTATGTGCCC 139041 | | ||| ||| || ||||| || | | || | | || |||| || || || Sbjct 818477 TCAGATTGCGCGTTACGGTCTTAG-CGACTTCCTTCAGCTTTGCAAAGTCATACGT---- 818531 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACC 139101 ||||| | | ||||| |||| | |||||||| | ||||| ||| Sbjct 818532 --TTTGTCTT------GCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACC 818583 Query 139102 GCCACTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGAT 139160 || || || | | | || ||| || ||||| || | ||||| || ||| ||||| Sbjct 818584 GCTACCTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGAT 818642 Query 139161 CGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220 || || | ||| || || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 818643 GGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGG 818702 Query 139221 TGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTG 139280 | ||| |||||||| || | || || || ||| ||| || | | || Sbjct 818703 TACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTG 818762 Query 139281 ACGCACGTAAA--GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCG 139338 |||| |||| | | || ||||||| ||| || | ||||| ||| || Sbjct 818763 CCGCA--TAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCC 818820 Query 139339 TAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398 ||| ||| || || || |||| | || || ||||| || ||| | |||||||| Sbjct 818821 CAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCC 818880 Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458 | || ||| ||||||||| ||||| ||||| | ||| | | || || || || Sbjct 818881 TCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGG 818940 Query 139459 TTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCAT 139518 || ||| || |||| |||| | || || || || | ||| | ||||| Sbjct 818941 ACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCAC 819000 Query 139519 GGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGT 139575 || || ||||||||||| | ||| || ||| |||||||| |||||||||| ||| Sbjct 819001 GGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGT 819060 Query 139576 ACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTA 139635 | | ||| ||| | ||||||| ||||||| |||||||| ||| | | ||||| || | Sbjct 819061 GCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTAC-- 819118 Query 139636 CGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693 |||| | ||| | || |||| || || || | ||||| || ||| | Sbjct 819119 CGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCG 819178 Query 139694 ATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 | || || |||| | || | || | | || ||||| || || ||||| || || Sbjct 819179 ACTTTGAAATTAGGGCACACT-GCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCG 819237 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 ||| || | ||| ||||| |||||||| || || | | |||| | || ||||||| | Sbjct 819238 GACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATA 819297 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCT- 139871 || || ||||| || || | | |||| || | ||| || ||||| |||| Sbjct 819298 GTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGAT--CGCTG 819355 Query 139872 CA-CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923 || | || ||| || ||||| || | || || ||||||||||| || ||| Sbjct 819356 CATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGG 819408 >seq250 Length=5469655 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || || | Sbjct 3557420 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTC 3557479 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 3557480 GGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 3557539 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || |||||||||||| | | |||| ||||| || Sbjct 3557540 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAA 3557599 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || || ||||| |||| ||||||| || Sbjct 3557600 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 3557647 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || || || || || || | | Sbjct 4641020 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 4640961 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 4640960 GACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 4640901 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||||||| | | | || || || ||| Sbjct 4640900 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAAC 4640841 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || || ||||| ||||| | || || || Sbjct 4640840 ATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGG 4640794 >seq1104 Length=7559990 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || || || ||||| || | || Sbjct 5393897 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCC 5393838 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| || ||||| || || ||||| Sbjct 5393837 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5393778 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||||||||| || |||||||||||| | | | |||| || |||||| Sbjct 5393777 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 5393718 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || || |||| | || |||| || || Sbjct 5393717 ATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGG 5393671 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || || || ||||| || |||| | Sbjct 5394353 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGA-GCCATC 5394295 Query 24764 G-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | | || | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 5394294 GGATACTATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5394235 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||||||| | | | |||| || ||||| Sbjct 5394234 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 5394175 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||||||||| || || |||| | || |||| || || Sbjct 5394174 CATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGG 5394127 >seq327 Length=13998812 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 3500930 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 3500989 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || ||||| ||||| Sbjct 3500990 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCAG 3501049 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | | |||| || || ||| Sbjct 3501050 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAC 3501109 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || | || |||||||| Sbjct 3501110 ATCCAGAAGGAGTCACCCCTTCACTTGGT 3501138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890772803920