Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq505 170 2e-37 seq1 84.2 2e-11 >seq505 Length=1729888 Score = 170 bits (188), Expect = 2e-37 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 |||||||| || ||||||||||| || |||||||| |||||||| | ||||| || || Sbjct 686460 TGCGTTTGAGCTCCCAGCTCGCAGCCAAAGTACTTCGTCGGGTAGGTTGCCGGGCGGCCG 686519 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | ||| || | |||| |||||| ||||| || |||||||||||||| ||||| || Sbjct 686520 ATCGCGCGCGCCACATCGGCCATGTTCACGATCACCGTCTTGATGCCGTTTCCCTTACCC 686579 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || ||||| ||| |||||| ||||| ||||| |||||||| ||| | ||||||||| Sbjct 686580 TCTACCTTCGCGTTGATGCGGGGCATCTTGTACCGGTAGAAGATGTCGGTCACATTGCGA 686639 Query 34624 TTAACGTTCACAGTCCCCATCGTGGCTGGTGTTA 34657 || |||||||| || |||| | |||| | ||| Sbjct 686640 TTCACGTTCACGGTAGCCATTTTTGCTGCTTTTA 686673 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||||||||| || | ||||| ||||| | ||| || | | |||| ||||| | Sbjct 686151 CGGCGGGTTCTTGATGATGAACGTGTTCACCTTGTGGTTCACCTCGAGCGGCCCGTGGAA 686210 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 ||||| || ||||||||||| |||| | ||| || | || ||||| || || || Sbjct 686211 GCCGCACGCCTTGCAGCCCTGCGAGATCGTACCCTTCTTGGACGAGACGATCAGGTCCGT 686270 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 |||||||||||| || ||||| |||| |||||||||||||||||| || || |||||||| Sbjct 686271 CTCCGGGTTGTCGCACTCCGGGCACAGCACAAACTTGCGGATGAACCCGTCGAGCAGGTC 686330 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||| | ||| | | ||||| || ||||| || ||||| |||||||| Sbjct 686331 CTGCAGCTTGGCTGCATCGTGCGAACCGTTCACAATGAAGCGTTCGTT 686378 >seq1 Length=16348944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 103738 CGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTACTGCAACGG 103797 ||| ||||| ||||| ||||| |||| |||||| ||||| ||||| ||| ||| Sbjct 12051345 CGACGCTGGCTTCTTCTACACGGGCATGAGCGACCGCGTCAAGTGCTTCAGCTGTGGCGG 12051286 Query 103798 CGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCTTTGGT 103853 || || || | |||||||| || |||||||||||||| || |||||| | |||| Sbjct 12051285 TGGGCTCAAGGACTGGGAGCAGGAGGACGACCCGTGGCAGCAGCACGCGATCTGGT 12051230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412835491750502