Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq294 172 9e-37 seq1 127 3e-23 seq328 114 2e-19 seq438 111 2e-18 seq472 107 3e-17 seq283 107 3e-17 >seq294 Length=4758485 Score = 172 bits (190), Expect = 9e-37 Identities = 187/250 (75%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| | | Sbjct 1386725 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGGA 1386666 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || |||||||||||||||| ||| ||| ||||||||| | Sbjct 1386665 GCAACAGTCGCACCGCCGTCTGGATCTCGCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 1386606 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC---------AA 1485640 ||||||||||| || || | |||| || |||| |||||||| || | Sbjct 1386605 GCGCCAGGCGGGACGCTTCCGCCGCGATCCGCTCGAAGATGTCGTTCACNNNNNNNNNNA 1386546 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700 | ||||||||| ||||| ||| ||| ||||| ||| |||||||||||||| | Sbjct 1386545 AGCTGTTCATGATGCTCATCGCCTTGGAGGAAATGCCGGTGTCCGGGTGCACCTGCTTCA 1386486 Query 1485701 GCACCTTGTA 1485710 |||||||||| Sbjct 1386485 GCACCTTGTA 1386476 >seq1 Length=16348944 Score = 127 bits (140), Expect = 3e-23 Identities = 244/355 (69%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 2019047 GGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT-CTTGGGCGCGGCCGCCGACG 2019105 ||| || || |||| |||| |||||||| ||| | || || |||| | | ||| || Sbjct 13832182 GGGTAAAACGACGACCATCCTCTGCCTGGCACGCATCCTGCTCGGGCCCAACTTCCG-CG 13832124 Query 2019106 AGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCA 2019165 ||||||||||||| || || || || |||||||||| | || || || || || | | Sbjct 13832123 AGGCCGTGCTCGAGCTGAACGCTTCCAACGAGCGCGGTATCGATGTGGTACGCAGCAAGA 13832064 Query 2019166 TCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCAT 2019223 |||| | | | | || | | || ||||| | |||||| |||||| | | || Sbjct 13832063 TCAAAATGTTTGCACAACAGAAGGTAACG--CTGCCCCGCGGCCGGCACAAGATTGTAAT 13832006 Query 2019224 CCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 ||| || || || || || | ||| || |||||||||||| || || || ||||| Sbjct 13832005 CCTGGACGAAGCGGATAGCATGACGGAGGGGGCCCAGCAGGCGCTGCGGCGAACGATGGA 13831946 Query 2019284 AAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGA 2019343 || || | |||||| ||||| |||||||| ||||| || ||| | | ||||||| Sbjct 13831945 AATCTATAGCAACACAACGCGCTTTGCGCTAGCCTGTAATACGAGCGAAAAGATCATCGA 13831886 Query 2019344 AGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 | | ||||| ||| || || || ||||||| || || |||| |||||| Sbjct 13831885 ACCGATCCAGTCCCGGTGTGCGATGCTGCGCTTCTCGAAGCTATCCGATGCCCAG 13831831 >seq328 Length=4755327 Score = 114 bits (126), Expect = 2e-19 Identities = 161/221 (73%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||||| ||||| ||| ||| || ||||| ||||| |||||| Sbjct 1649431 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 1649372 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||| ||||| || ||| || || ||| ||||| ||||| || || || ||| Sbjct 1649371 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAA 1649312 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCC 794517 ||| |||| |||||| || ||||| |||| |||| | |||||| |||| |||| Sbjct 1649311 GCC-ACGACCCGCTC-GCCAAAGT----TGGCCTTCTTGCTCGAGATCCAGTTCAGCGCC 1649258 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 || || ||||| | |||| | |||| ||| |||||||| Sbjct 1649257 CAATCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1649217 Score = 95.1 bits (104), Expect = 2e-13 Identities = 159/225 (71%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 793997 CTTCTCGCACCCGAGC--GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCAC 794054 ||||||||| || ||| || ||| ||| ||| ||||| || || ||||||||||| || Sbjct 1649648 CTTCTCGCAGCCCAGCTCGA-GCA-GCAAGCGATCGGCCACAAACTCAATGTACTGCGAC 1649591 Query 794055 ATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTC 794114 || || | ||||||||| | | |||| ||||| | || | | ||||| | | Sbjct 1649590 ATCAGATCACAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGC 1649531 Query 794115 TCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG---TCGGACGACGGCTTGTCG 794171 |||||| ||| || ||| |||||||| | | |||| || ||||||||| | Sbjct 1649530 TCGATCAGGACCGCATCGCGGATGATCTCC---GTCACGCGCTCCTTCGACGGCTTCTGC 1649474 Query 794172 ACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 || || | || | | |||||||||||||||||| ||||| ||| Sbjct 1649473 ACCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 1649429 >seq438 Length=11078434 Score = 111 bits (122), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| ||||||| | ||| |||| ||||| | Sbjct 2657528 GAAAAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGC 2657469 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| ||||||| ||||| ||||| || ||||||||| || || || || Sbjct 2657468 ACCCTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTG 2657409 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||| ||| | ||||||||||| | || || || || ||||| || Sbjct 2657408 ACCTGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 2657349 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 2657348 TTCAACATCAAGAACG 2657333 >seq472 Length=2253382 Score = 107 bits (118), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 819045 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 819104 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || | | ||| | ||| ||||| | |||| || | || Sbjct 819105 TATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 819164 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||| ||| || || || || |||| |||||||| |||||||||||||| Sbjct 819165 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 819224 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || | |||| |||||| ||||| ||||| Sbjct 819225 AATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGA 819263 >seq283 Length=5471375 Score = 107 bits (118), Expect = 3e-17 Identities = 166/230 (72%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 653648 CCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG-----C 653701 |||| || | |||||||| | ||||||||||||| || || || || ||| | | Sbjct 4914464 CCCGCAGATCGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTGCGGTATAC 4914522 Query 653702 AGCGTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATC 653761 || | ||| | ||||| ||||||| || | | ||| |||| ||||| |||||| Sbjct 4914523 AGTAT-CGCCAG---GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACATC 4914575 Query 653762 GTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTC 653821 |||| |||||||||||||||||||| || |||||||| || | |||| ||| | || Sbjct 4914576 ATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGAGTGCATC 4914635 Query 653822 CTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 | ||||||| ||| || | ||||| | | ||||||| ||| ||||| Sbjct 4914636 CAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 4914685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916117261282946