Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1104 149 1e-30 seq327 114 3e-20 seq272 86.0 1e-11 >seq1104 Length=7559990 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || ||||| ||||| ||||| || ||||| || || Sbjct 5393671 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5393730 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| |||||||| || | || |||||||| || Sbjct 5393731 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5393790 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || |||||||| || ||||| ||||||||||| ||| || ||| Sbjct 5393791 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACT 5393850 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| || || || || |||||||| Sbjct 5393851 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 >seq327 Length=13998812 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || | || || ||||| || || || || || | | | || Sbjct 3501145 ACGAAGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 3501086 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| | | || ||||||||||| || || ||||| Sbjct 3501085 GTCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 3501026 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| || || || || || ||||| || || || || |||| || || Sbjct 3501025 ATCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGAT 3500966 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 3500965 GGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3500930 >seq272 Length=5604218 Score = 86.0 bits (94), Expect = 1e-11 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384 |||| |||||| ||| ||||| | | || | |||||| | | || || || |||| Sbjct 4889126 AAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGC 4889067 Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444 | | || | | ||||||||||| |||||||| || || ||||| | ||| || || | Sbjct 4889066 ACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATTCTGGAGTGGACGAAAACGCCCGAGG 4889007 Query 198445 ACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503 | || ||||| | |||||||| ||| || ||| || || || ||||| Sbjct 4889006 AAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCG 4888948 Query 198504 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAA 198563 ||||| ||||| ||||| |||||||| || || | || |||| | ||||| || Sbjct 4888947 AACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCAGGGCTGGAAGGAG 4888888 Query 198564 AGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | || ||||| || || | || ||||| ||||| || Sbjct 4888887 CGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGG 4888847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981811928291546