Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq272 96.9 6e-15 >seq272 Length=5604218 Score = 96.9 bits (106), Expect = 6e-15 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 |||| |||||| ||| ||||| | | || | |||||| ||| || || || |||| Sbjct 4889126 AAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGC 4889067 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 | | || | || ||||||||||| |||||||| || || ||||| | ||| || || | Sbjct 4889066 ACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATTCTGGAGTGGACGAAAACGCCCGAGG 4889007 Query 183128 ATGC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186 | || ||||| | |||||| ||||| || ||| || || || ||||| Sbjct 4889006 AAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCG 4888948 Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGA 183245 ||||| ||||| ||||| |||||||| || || | |||||| || || ||||| || Sbjct 4888947 AACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCAGGGC-TGGAAGGA 4888889 Query 183246 AAGACCTATATTTGGAAAGATAAGATATATGAATTATGA 183284 | || ||||| || || | || ||||| ||||| Sbjct 4888888 GCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGA 4888850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903397490735040