Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq472 450 1e-121 seq250 140 3e-28 seq1104 127 2e-24 seq328 107 2e-18 >seq472 Length=2253382 Score = 450 bits (498), Expect = 1e-121 Identities = 969/1437 (67%), Gaps = 20/1437 (1%) Strand=Plus/Plus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| |||||||| | |||||||||| || ||||| | Sbjct 817987 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 818046 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || |||| || ||||| || |||||||| | ||| || || || | ||||| ||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || | ||||||||| ||||| | ||| | || || || ||||| | ||| Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 818166 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||| ||| || || |||| | ||||||||| |||||||||| ||||| ||| Sbjct 818167 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTC 818226 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | || ||||||||||||| ||||||||| | || |||| || |||||||| Sbjct 818227 ACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCT 818286 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || |||||||||||||| || || ||| ||||| || ||| ||| ||| Sbjct 818287 TCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCG 818346 Query 148611 CTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCC 148669 ||||||||||| ||| |||| | | | ||||| ||||| | |||||| ||||| | || Sbjct 818347 CTTTCGTACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCC 818405 Query 148670 AATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGT 148728 || |||| ||| || |||||| | || ||| | | ||||||| ||| | Sbjct 818406 GATCGGCCTGTGGCGCATATTGGAGCGCTTAGC-CTCCGGCACGGGATAGTAATTGACAT 818464 Query 148729 CGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAAT 148788 | ||||| |||| ||||||||| || ||| | | | |||| | |||| | Sbjct 818465 CAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGT 818524 Query 148789 CGTAC---TTGTC---ATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 | ||| ||||| | ||| | ||| ||||| |||||| ||||| |||||||| | Sbjct 818525 CATACGTTTTGTCTTGCTTTAC-AAACAT--GTTCAAGGCGATCGAGGCCAGATTGCATA 818581 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | || ||||||| | |||||| || ||||| | ||||| ||| ||||||| Sbjct 818582 CCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGA 818641 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| | |||| || || || || | ||||| || ||||||||||||||||||| Sbjct 818642 TGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACG 818701 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCGATGCAGGTCCTGCGCGCGCAC 149020 || |||| ||||||||||||| ||| | || || | | ||| |||||||| ||| Sbjct 818702 GTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCA--CAGATCCTGCGCCTTCAC 818759 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 ||| || |||||||||| | |||||| || |||||| ||||||| | ||||| Sbjct 818760 CTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC 818819 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 || || || ||||| || | |||||||||||| || ||||| ||| ||| Sbjct 818820 CCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGC 818879 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | ||| |||| ||| ||||| || || | |||||| ||||| | | ||| || || Sbjct 818880 CTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCG 818939 Query 149201 GCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCA 149260 | || || ||| |||| ||| | ||| | |||||| || | ||||| Sbjct 818940 GACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCA 818999 Query 149261 CGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCG 149317 |||||| | || | |||| || || ||| ||||| ||||| ||||||| || Sbjct 819000 CGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCG 819059 Query 149318 CACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGA 149377 || | ||||| | || || | ||| || | | || | | | ||||| ||| Sbjct 819060 TGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACC 819119 Query 149378 GCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTA 149437 | ||| | || ||| || | ||||||||| | |||||||| ||| | | Sbjct 819120 GGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGA 819179 Query 149438 CTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTT 149497 |||||| || || || | ||||| |||||||||||| ||||| || Sbjct 819180 CTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGA 819239 Query 149498 CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGT 149557 |||||||| ||| ||||| || | | || ||| ||||| | ||||| ||||| || Sbjct 819240 CATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATAGT 819299 Query 149558 GGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTC 149617 || |||||| ||||| || || | || || | ||| | ||||| | | || Sbjct 819300 TGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATC 819359 Query 149618 CATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||||| |||||||||||||| || || |||||||||||||| ||||| || ||||| Sbjct 819360 GATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTC 819416 >seq250 Length=5469655 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | ||| ||| | ||||| |||| Sbjct 4640817 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA-TCCTCCAGCT 4640875 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || |||||||||||||| ||||| Sbjct 4640876 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 4640935 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||| | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 4640936 TTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 4640995 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 4640996 TGAGTGTTTTCACGAAAATCTGCATG 4641021 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||||||| || |||| | | | ||||| |||| Sbjct 3557624 ATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCA-TCCTCCAGCT 3557566 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 3557565 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 3557506 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 3557505 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 3557446 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 3557445 TGAGGGTTTTGACGAAGATCTGCAT 3557421 >seq1104 Length=7559990 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || | || || |||||||| || || ||||| || |||||| Sbjct 5393743 TCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTG 5393802 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||| | | ||||| ||| |||| ||||| || || | ||||| | Sbjct 5393803 TCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATG 5393862 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| |||||||||||||| Sbjct 5393863 GTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || || || || || ||| | | | || || |||| Sbjct 5393922 ATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCTTCCAGCT 5393980 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 5393981 GCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 5394040 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | ||||| || || | |||| ||| || |||| Sbjct 5394041 TCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTTCCGG 5394100 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||| |||||||||||||| Sbjct 5394101 TCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || ||| | || || |||||||| || || ||||| || |||||| Sbjct 5394199 TCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTG 5394258 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||||| || || | ||||| || || | |||| | Sbjct 5394259 TCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATG 5394318 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| |||||||||||||| Sbjct 5394319 GTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 >seq328 Length=4755327 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 1649456 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 1649397 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | ||| | |||| | |||| || ||||| ||||| || || Sbjct 1649396 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 1649337 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| || || || || || | |||||| | || | ||| ||||||| Sbjct 1649336 GAAGATACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 1649277 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| || ||||| ||||||||||| Sbjct 1649276 CGAGATCCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCA 1649230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413464089360