Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq250 93.3 1e-13 seq1104 91.5 3e-13 >seq250 Length=5469655 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || ||| ||||| |||| Sbjct 4641005 AAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGACACGATCGAGAAT 4640946 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || ||||| ||| || || || | || |||||| Sbjct 4640945 GTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 4640886 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | |||| |||||| | ||||| || || Sbjct 4640885 GCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATTCAGAAGGAATCG 4640826 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || |||| || Sbjct 4640825 ACCCTTCATCTGGTGCTGCGACTCCG 4640800 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || || | || || || || || Sbjct 3557424 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 3557483 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| ||| || || Sbjct 3557484 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 3557543 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || || ||||||||||| || Sbjct 3557544 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAACATC 3557603 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 3557604 CAGAAGGAGTCGACCCTTCATCTGGT 3557629 >seq1104 Length=7559990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||||| || ||| || || | || Sbjct 5393882 AAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCCGATACGATTGAGAAT 5393823 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || ||||| ||| || || | || ||||| Sbjct 5393822 GTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTT 5393763 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| ||||| | || || | || || ||| ||||||| || || Sbjct 5393762 GCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCG 5393703 Query 206365 ACTCTTCACCTTGTT 206379 |||||||| || ||| Sbjct 5393702 ACTCTTCATCTGGTT 5393688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| |||| || || || || || |||| Sbjct 5394110 AAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCGGATACGATCGAGAAT 5394051 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| ||| || || | || |||||| Sbjct 5394050 GTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTC 5393991 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || || ||| ||||||| || || Sbjct 5393990 GCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCC 5393931 Query 206365 ACTCTTCACCTTGTT 206379 || ||||| || ||| Sbjct 5393930 ACCCTTCATCTGGTT 5393916 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || ||||| || || || ||||||| |||||||| | || || | |||||||| Sbjct 5393916 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTC 5393975 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||||||| || || || ||| Sbjct 5393976 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGA 5394009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181802417516094