Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq472 358 6e-94 seq327 105 6e-18 seq1104 104 2e-17 seq250 93.3 4e-14 >seq472 Length=2253382 Score = 358 bits (396), Expect = 6e-94 Identities = 1011/1535 (66%), Gaps = 32/1535 (2%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || || ||||| || |||||||||| |||||| || || || || || ||| | Sbjct 817993 TGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTAC 818052 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 ||||| || || ||||| ||||| | ||||| ||||||| || || ||||| ||| Sbjct 818053 GGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCC 818112 Query 147010 ACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCC 147069 | || || ||||| || | |||| | ||| || |||||||| ||||| | Sbjct 818113 AACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTC 818172 Query 147070 CACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 |||| || || | ||||||||| |||||||| | | || || | ||| Sbjct 818173 CACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGA 818232 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||||| || |||| ||| ||| || || ||||| |||||||| || || ||| Sbjct 818233 CTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGC 818292 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || || ||||| ||||||||| ||||||| ||||| || |||||||| ||| Sbjct 818293 GCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCG 818352 Query 147250 TAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 || || ||| |||| || | || |||||||||| ||||| | |||| ||||| || Sbjct 818353 TACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGG 818411 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 | || ||| |||||| || || | |||||||| ||| |||||| || Sbjct 818412 CCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGAT 818471 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 ||||| || || ||| ||| |||| | | || || || | || ||||| || Sbjct 818472 TTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT 818531 Query 147429 CCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 ||||| | || || || ||||| |||||| || ||||||||||| || || Sbjct 818532 TTTGTCTTGCTTTACAAAC--AT--GTTCAAGGCGATCGAGGCCAGATTGCATACCGCTA 818587 Query 147488 TCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| || || || ||||| ||| || || | ||||| |||| ||||| ||| Sbjct 818588 CCTCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTG 818646 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 || | ||| ||||| || ||||| |||||||| || || ||| | |||||||||||| || Sbjct 818647 CCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACG 818706 Query 147607 CCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 ||||| || || |||| ||| | ||| ||||| ||| |||||||| |||| || Sbjct 818707 CCGGTTTCCACCTGCGATTCGATGATCGCAAACC---ACAGATCCTGCGCCTTCACCTGC 818763 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 || | |||| ||||| || ||||||| | ||||| | ||| ||||| ||||| || Sbjct 818764 CGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAG 818823 Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 || | || |||||||| | ||||| |||||||| |||||| |||| ||| | Sbjct 818824 GTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCC 818883 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA 147843 || || |||| ||||| ||||| | ||| || ||||| | | || || || | Sbjct 818884 ACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACC 818943 Query 147844 TCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CACGCTATAGATGTCGGCGTGCCAGGG 147902 ||||| ||| |||| |||| || || || | | | || || | ||||| || Sbjct 818944 TCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGA-ATATATCACCATGCCACGG 819002 Query 147903 TTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCAC 147959 || | |||| ||| | || || ||| || || ||||| ||||| | || | Sbjct 819003 CTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGC 819062 Query 147960 CATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT---GGA 148016 | | ||||| | ||||||| ||| || |||| ||| ||| | ||||| || ||| Sbjct 819063 CGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGA 819122 Query 148017 ATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTA 148076 ||| | | || || || | ||||||||| | || ||||| ||| | | Sbjct 819123 ---GATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGA 819179 Query 148077 CTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 |||||| || || || | || || ||||||||| || ||||| || || Sbjct 819180 CTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATC--TTCG 819237 Query 148137 GAC---GCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 ||| | ||| || || || || | | || ||| | |||| |||||| || | Sbjct 819238 GACATGGTCAA-CAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACAT 819296 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || ||||| ||||| | | || || || ||||| || || | Sbjct 819297 AGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGC 819356 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| ||||| || ||||| | || |||||||| ||||||||||| || || || Sbjct 819357 ATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTC 819416 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 | | | || |||||||| || | ||| ||| | |||||| | || || || Sbjct 819417 GACGATTTTTCCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATA 819476 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||| | || || | |||||| |||||||| Sbjct 819477 GTTGTACCCGAAGTCGCGATCGTAAATGATGGCCG 819511 >seq327 Length=13998812 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||||| || || |||||||||||| || |||||| || || Sbjct 3501139 AACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTC 3501080 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||||| |||| | |||||| ||||||||||| || || || ||||| Sbjct 3501079 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTG 3501020 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | || || | |||||| || || | ||| | || || Sbjct 3501019 GATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 3500960 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| || || | ||| ||||||||| Sbjct 3500959 GCCAGTCAGCGTCTTCACGAAGATCTGCATG 3500929 >seq1104 Length=7559990 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | || || || || ||||| ||||| || ||| Sbjct 5393676 ACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGT 5393735 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| | |||| |||||||| |||||||| || || || Sbjct 5393736 GCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCC 5393795 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||| |||| | || | ||||||| ||||| ||||| | Sbjct 5393796 CTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAG 5393855 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||||||||| | |||||||||||| Sbjct 5393856 GGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | || || || || ||||| ||||| || ||| Sbjct 5393904 ACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGT 5393963 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 5393964 GCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 5394023 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 5394024 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAG 5394083 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||||||||| | |||||||||||| Sbjct 5394084 AGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | || || || || ||||| ||||| || ||| Sbjct 5394132 ACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGT 5394191 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| |||||||| |||||||| || || || Sbjct 5394192 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 5394251 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | |||||| | ||||| ||||| | Sbjct 5394252 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAG 5394311 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||||||||| | |||||||||||| Sbjct 5394312 AGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 >seq250 Length=5469655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || || || ||||||||||||||| | || || | Sbjct 4640806 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 4640865 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| |||||||| || |||||||| || Sbjct 4640866 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 4640925 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | || || | ||||| || || | || | Sbjct 4640926 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 4640985 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || ||||| | ||||||||||||| Sbjct 4640986 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 4641021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603967425040