Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq294 129 8e-24 seq472 123 4e-22 seq328 107 3e-17 seq283 96.9 5e-14 >seq294 Length=4758485 Score = 129 bits (142), Expect = 8e-24 Identities = 173/241 (72%), Gaps = 15/241 (6%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||||||||| |||| ||| ||| |||| | Sbjct 1386473 ATCTACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATT-TCCTCCAAGGCG 1386526 Query 724971 ATGTCGATCATGAACTCGTTT---------GTCAACGACATGATCGACCGCATCGGCACC 725021 ||| ||||||||| || || |||||||| |||| || |||| | Sbjct 1386527 ATGAGCATCATGAACAGCTTNNNNNNNNNNGTGAACGACATCTTCGAGCGGATCGCGGCG 1386586 Query 725022 GAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAG 725081 || || |||||||||| || |||||||||| ||| ||| | |||||||||||| Sbjct 1386587 GAAGCGTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGCGAGATCCAG 1386646 Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 || || ||||| ||| | | | |||||| ||||||| ||||||||| |||||||||||| Sbjct 1386647 ACGGCGGTGCGACTGTTGCTCCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACC 1386706 Query 725142 A 725142 | Sbjct 1386707 A 1386707 >seq472 Length=2253382 Score = 123 bits (136), Expect = 4e-22 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004 ||||| ||| || ||| |||||| ||||| |||||| |||| | ||| || || Sbjct 819282 CACGCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGA 819223 Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||||||||| |||||||| |||||||| || || || || ||| ||||||| |||||||| Sbjct 819222 GGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGG 819163 Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124 | || ||| | ||||| ||| | ||| | | || || ||||| || Sbjct 819162 ACTGAACGTGCACTGTATCCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATATC 819103 Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| || ||||| ||||| ||||| | ||| | ||||| || |||||||| ||| Sbjct 819102 GAACGGTCTGGTGCCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAG 819045 >seq328 Length=4755327 Score = 107 bits (118), Expect = 3e-17 Identities = 187/268 (70%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||| ||||| | || ||||| || || | |||| | ||| Sbjct 1648813 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 1648872 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| |||||||| ||| ||| ||||| ||||| ||||| || ||||| ||| || Sbjct 1648873 GGGAGTCGCTGAAAC-CGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTT-GC 1648930 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||| || |||||| |||||| |||| | ||||| | | ||||| || | Sbjct 1648931 CGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 1648990 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || | || ||||| |||||||| || || ||||| | ||| || | Sbjct 1648991 TACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGAT 1649050 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||||| ||||||||||| ||| || Sbjct 1649051 GTACTCGCTGCTGATCGACACGTACATC 1649078 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/222 (70%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGA-- 1456509 ||||||| ||||||||||| ||| | | || | || || | |||||||||| || Sbjct 1649434 TGCACTGCGACTTTGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGC 1649493 Query 1456510 -CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 |||| | | |||||||| ||| || ||| ||||||| | ||||| | | || Sbjct 1649494 GCGTG---ACGGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGG 1649550 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATT 1456627 | |||||||||| | | ||||||||| | | || |||| |||||||||| | | Sbjct 1649551 CACTGCCGGTGGATATGCTGGGCATGAACTGTGA--TCTGATGTCGCAGTACATTG-AGT 1649607 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAG 1456669 |||| ||||| ||| |||| | ||| |||||| |||||| Sbjct 1649608 TTGTGGCCGATCGCTTGCTGCTCGAGCTGGGCTGC-GAGAAG 1649648 >seq283 Length=5471375 Score = 96.9 bits (106), Expect = 5e-14 Identities = 209/303 (69%), Gaps = 15/303 (5%) Strand=Plus/Minus Query 1601179 GTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGG 1601235 |||||||||||||||| | || || || |||||||||| || ||| || ||| Sbjct 4914056 GTCCTCCTGGTTGTAGCCCGTGTAGCACAGGATGGCCACGATCGAATTGATACCGGCCGG 4913997 Query 1601236 GAGGCGCGTGGCGCCGATGACGTCCTCCATGG--CG-GTCTGCACCAGCGGCACCTGCGG 1601292 || | | || |||| || | |||||| | || ||| ||| |||||| | ||| Sbjct 4913996 CAG-CTCACGGAACCGAAGA--TACTCCATCGAACGCGTCGTCACGAGCGGCTTCATCGG 4913940 Query 1601293 GTAGCACAGGGCGTGCGACACCGTGTCGATG-GCA--TGGTCGGCGTTGAGCGACACGAC 1601349 |||| | || |||||| | |||||| ||| ||| ||| | ||| |||| | Sbjct 4913939 GTAGTAAAGCACGTGCGCGAGCGTGTCCATGCGCACGTGGAAGTTCGTGATGTACACACC 4913880 Query 1601350 GGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTT 1601409 | | || |||||| ||||| || | |||||| |||| ||||| ||| ||||| | Sbjct 4913879 --CATCGC-CTGCTTACCCATAGCGCTTTGGTAGGTGTTACGCGGACTCTGATTGTGATC 4913823 Query 1601410 GGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTG 1601469 | |||||||||||||| |||||| |||||| || | | ||| |||| |||| ||| Sbjct 4913822 CGGGAACGGGATGATGGAAGCGCAGACGCCCAAAATCATCGCCGGATGGATCTCGCAGTG 4913763 Query 1601470 CGT 1601472 ||| Sbjct 4913762 CGT 4913760 Score = 89.7 bits (98), Expect = 7e-12 Identities = 162/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| ||||||| | | ||||| | || ||| ||||||| ||| | ||| Sbjct 4914685 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 4914626 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | || |||||||| || |||||||||||||||||||| || | ||||| ||| Sbjct 4914625 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTAATGATGATGTCCGGC 4914566 Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTG-----CCCA 1600694 || || ||| | | || | ||||||||||| ||| | | ||| | || Sbjct 4914565 GTAATGCCCTCGC-ACGTGA--ACGGCATGTCCTC-CTGGCG---ATACTGTATACCGCA 4914513 Query 1600695 CGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGG 1600743 | || || || || ||||||||||||| | |||||||| | || |||| Sbjct 4914512 C-GTACCTTTCTGTCCGTGGCGCGACGCAAACTTGTCGCCGATCTGCGGG 4914464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177694107468668