Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq472 286 3e-72 seq250 138 1e-27 seq1104 109 6e-19 seq327 84.2 2e-11 >seq472 Length=2253382 Score = 286 bits (316), Expect = 3e-72 Identities = 1186/1851 (64%), Gaps = 54/1851 (3%) Strand=Plus/Minus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| ||||| | || ||| ||||| | | | ||||| || || ||||| Sbjct 819499 ACGATCGCGACTTCGGGTACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTAC 819440 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 |||| ||||| || || || || || || ||||||||| ||||||| || | | Sbjct 819439 TGAAGATCAAGGGAAAAATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTG 819380 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 |||| || ||||| ||||| || || || | || || ||| | || |||| | Sbjct 819379 GCATCCATGGCGAGGACATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTT 819320 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG-CCTCAATTGTCC 7710 | ||||| ||||| ||||| || |||||||| |||| ||| | ||| || || | || Sbjct 819319 ACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCCACGCA-GCGTCCCCAGCTTTCG 819261 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || || || || | |||||| |||||| ||||| || ||||| ||| |||||||| Sbjct 819260 TCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAG 819201 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 | || ||| ||||| || | | ||| || || || |||||||| || | ||| Sbjct 819200 CAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACGTGCACTGTATCCGC 819141 Query 7831 GCCAACGGTAGCCGCATCGTGTCC---ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATG 7887 || || || | |||| ||| || ||||| | | | | |||| | | ||| ||| Sbjct 819140 GCGAAGGGAACGTACATC---TCCGGTACGAACGGGATATCGAACGGTCTGGTGCCGATG 819084 Query 7888 TTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGC 7944 ||||||| | ||| || ||| || | || || ||||| || || ||| || Sbjct 819083 CTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGA 819024 Query 7945 GCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGT 8004 || ||||||||| | ||||||||||| | || || | || | || ||||| Sbjct 819023 GCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAG 818964 Query 8005 CGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCC 8064 |||| || || || | || || || | || | || | | ||| | || Sbjct 818963 AAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCG 818904 Query 8065 GATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCC---CGAT 8121 || ||||| ||| ||| || | ||| | ||| || |||||||| |||| Sbjct 818903 GACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCGCACGAT 818844 Query 8122 CGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATAC 8181 || | ||| | | | | || | | || || | |||||| ||| Sbjct 818843 TGTCCCGGGCTATCGGACACC---TGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTAC 818787 Query 8182 GAACACGACGG-CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTAT 8240 || | || || ||| | ||||||| ||||| |||| || ||| || || || Sbjct 818786 GAGAAAGAGGGTCGCTTTA-TGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCAT 818728 Query 8241 CGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAA 8300 ||||| || |||||||| | ||||||||||||||||| || |||||||| || Sbjct 818727 CGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAA 818668 Query 8301 AAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACA 8360 ||| || || || | |||||||| || ||| ||||| |||| ||||| | Sbjct 818667 AAGTAACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGCACTGAGATTGTGGA 818608 Query 8361 GTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTT 8420 |||| || || || || || || |||||||| || ||| | || ||| ||| Sbjct 818607 GTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTT 818548 Query 8421 CGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGAC 8480 || | | | | || || || ||||||| | | |||| | | || | ||| Sbjct 818547 TGTAAAGCAAGAC---AAAACGTATGACTTTGCAAAGCTGAAGGAAGTCGCTAA---GAC 818494 Query 8481 GGTA---CGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC--- 8534 ||| |||||| | | |||||||||||||||| |||||| || || || Sbjct 818493 CGTAACGCGCAATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAA 818434 Query 8535 GCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGC 8594 |||| || || ||||||||||| || | || | |||||||| || ||||||| || Sbjct 818433 GCGC---TCCAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGGCCGATGC 818377 Query 8595 GTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAAT 8654 ||| | || ||||| || ||||||||| |||| || | | ||| || | |||| Sbjct 818376 GTTCATCCTGATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAACAAAT 818317 Query 8655 AGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCC---CGAGAATT 8711 | ||||| | || |||||||| | ||||| |||||| | | ||| ||||| | Sbjct 818316 ATTCGAAACCATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGA--T 818259 Query 8712 GGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACAT 8771 || | ||||||| |||||| |||||| || | ||| || || ||||| ||||| || Sbjct 818258 GGAC-CGTACGAGACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAGTACGAGAT 818200 Query 8772 GTGGAATGTCACG---CCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 |||||| || | || || | ||||||| ||| ||| ||||| || || || Sbjct 818199 GTGGAA---CAAGGAACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGC 818143 Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888 | ||| | |||||||||||| || |||| ||||| || || | || || || Sbjct 818142 CAAGCACGGCATTCGCAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACA 818083 Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGT 8948 ||| | || ||||| ||||| || ||||||| ||| ||||| ||| || || || Sbjct 818082 AATTCTCGGCAACAATGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGT 818023 Query 8949 GTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGG 9008 | || | ||||| || || |||| | |||| | ||| || |||| | | ||| Sbjct 818022 GCTGTCGGGCGAGTTCCAGGTGGTGAACCATCATCTTCTGCAGGATTTGACCAACATGGG 817963 Query 9009 CGTTTACGA---CGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCG-TTCAGA 9064 | | || ||||| | | ||| || || ||| || | || | || | Sbjct 817962 TCTGTGGGATCTCGACATGAAGAACGA---AATTCTGTCCAACAATGG-ATCGATCCAAA 817907 Query 9065 ACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGC 9124 | |||| || | || || | ||| || ||||| ||||| || ||||| || | Sbjct 817906 AGATTGCGGCTATACCGCAGGAAATTCGCGACCTGTACAAAACGGTATGGGAGATCTCGG 817847 Query 9125 AAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTT 9184 | ||| ||| ||||| || ||| | ||||| ||||| |||||| ||||| | Sbjct 817846 TGAAAACGTGCATCAAAATGGCCGCAGATCGTGGCGCGTTTATCGATCAGTCGCAATCGT 817787 Query 9185 TTAACGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTT 9244 | ||| | ||| || | |||| || | | || | || |||| | | Sbjct 817786 TCAACATTCACGTCGCGGAGCCAAACTATGGCAAGCTGACGTCGATCCATTTCTATGGCT 817727 Query 9245 GGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCG 9295 |||| ||||| || ||||| |||||||||||| |||| || || || |||| Sbjct 817726 GGAAGATGGGATTGAAAACTGGCATGTACTATCTGCGTACCAAGCCGGCCG 817676 >seq250 Length=5469655 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || || | |||||||| ||| || || || || |||||||| |||||||||||||| Sbjct 4640790 CTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTC 4640849 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | ||| || || || ||||| ||||| || || |||| |||||||||||| || Sbjct 4640850 GGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 4640909 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || |||||||| || || || || ||| || || || | ||||| || | || Sbjct 4640910 GGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTC 4640969 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || ||||| || ||||| | ||||| |||||||| ||||| || Sbjct 4640970 GACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 4641023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || || || ||||| || |||||||| ||| | ||| | Sbjct 3557638 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGG 3557579 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| ||||| || || || Sbjct 3557578 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 3557519 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | || || || | || || || || ||| Sbjct 3557518 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 3557459 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 3557458 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 3557417 >seq1104 Length=7559990 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | || || || || || |||||||| || ||||| ||||| Sbjct 5393668 TTTCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCC 5393727 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| || || ||||| |||| |||||||||||| ||| Sbjct 5393728 GACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGC 5393787 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || || || ||| || || || | || ||||| | || Sbjct 5393788 GGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCA 5393847 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || ||||| | |||||| |||||||| ||||| Sbjct 5393848 ACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || ||||| ||||| | |||| | || || Sbjct 5393917 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5393976 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || |||| |||||||||||| ||||| || || || || || || Sbjct 5393977 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5394036 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | || || || | || || || ||||| ||||| || Sbjct 5394037 ATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTT 5394096 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | |||||| |||||||| ||||| Sbjct 5394097 CCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || |||||||| || ||||| ||||| | |||| | || || Sbjct 5394145 ACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 5394204 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || |||| |||||||||||| ||||| || || || || || || Sbjct 5394205 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5394264 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | || || || | || || || ||||| ||||| || Sbjct 5394265 ATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTCTTT 5394324 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 ||||| | |||||| |||||||| ||||| || | | ||| Sbjct 5394325 CCGGTCAGAGTTTTCACGAAAATCTGCATATTTTATCTGT 5394364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| || || | ||| || | | || |||||||||||| Sbjct 5396997 TTCCACCCTTCAGCCGGAGCACCAGATGCATCGTCGAGCCGTGCTGGATGTTGTAGTCGG 5397056 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | | || ||| ||||||||||| || ||||| || | ||||||||||| || | Sbjct 5397057 ATATGATCCGACCGTCATCGAGCTGTTTACCGGCAAAGATGATTCGCTGCTGATCCGGTG 5397116 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAA---TGTGTCGGA--CGA 134659 |||||||| || || |||||| ||| | |||||| || || || ||| Sbjct 5397117 CAATGCCTTCACGTTGTTCAATTTTGCTTTTAA---TGTCCAAAACCGTTTCCGAAGCGA 5397173 Query 134660 TTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||| ||||| || || ||||| ||||||| || || || || || ||||| Sbjct 5397174 T--CACATCGAGGGTGATCGTTTTCCCGGTTAGCGTCTTTACAAAGATCTGCAT 5397225 >seq327 Length=13998812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134520 GATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579 || ||||| || |||||||||||| | ||| | ||| || ||||| || || || Sbjct 3501123 GACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCG 3501064 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || ||||||||||||||||| || || || || || || || || || || || || Sbjct 3501063 AAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACG 3501004 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 || | ||||| |||| || || || || || ||||| || || || | || || Sbjct 3501003 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 3500944 Query 134700 ACGAAAATTTGCAT 134713 ||||| || ||||| Sbjct 3500943 ACGAAGATCTGCAT 3500930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505390730579280