Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq299 120 2e-22 >seq299 Length=36164 Score = 120 bits (132), Expect = 2e-22 Identities = 213/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 19223 GGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTA 19282 ||| | || |||| ||| ||||| |||||| | || ||| || || ||||| Sbjct 16800 GGATTTTGGAAGA-ATGGGCATTGGTGGATTGGATCGTGAATTTAATGCGATATTTCGAC 16742 Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATG 19342 | || |||| ||||||||||| | |||| || || ||||| ||||||||||||| | Sbjct 16741 GTGCTTTTGCTTCGCGTGTTTTCCCACCAGAGGTGGTTGAACAACTGGGATGTAAACACG 16682 Query 19343 TTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAAC 19402 | || || | || ||||| || || ||| ||| |||||| | || ||| || || Sbjct 16681 TAAAGGGCATTCTTCTATATGGACCTCCTGGTACTGGTAAAACACTTATGGCGCGACAAA 16622 Query 19403 TTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAA 19459 || | | | ||| | | | |||| || || ||||||||||| | || ||| Sbjct 16621 TTGGAACAATGTTAAATGCTCGAGAACCA---AAGATAGTAAATGGTCCGCAGATTTTAG 16565 Query 19460 ATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAG 19519 |||||||||| ||| |||| |||| ||||| || || | || ||||| || ||||| | Sbjct 16564 ATAAATATGTCGGTGAATCAGAAGCTAATGTGCGTCGACTATTCGCTGATGCCGAAGAGG 16505 Query 19520 AACAAAAA 19527 || ||||| Sbjct 16504 AAGAAAAA 16497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450119390070