Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq472 230 2e-55 seq1104 100 2e-16 >seq472 Length=2253382 Score = 230 bits (254), Expect = 2e-55 Identities = 1080/1692 (64%), Gaps = 41/1692 (2%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || || || ||||| |||||||||||| |||| ||| |||||||| Sbjct 817648 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATGCCA 817707 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAATTGG 130523 ||||| | ||| || || ||||| ||||| || | ||| || || | Sbjct 817708 GTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTCA--GCTTGCCATAGTTTG 817765 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | ||| ||| ||||||| ||||||||| ||||| ||||| ||||| | ||||| | Sbjct 817766 GCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCGG 817825 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || ||| | ||| | |||||||| | || ||||| || || | ||| Sbjct 817826 CCATTTTGATGCACGTTTTCACCGAG-ATCTCCCATACCGTTTTGTACAGGTCGCGAATT 817884 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | ||||| ||||||| ||| | || | || ||||||| | ||||||||| Sbjct 817885 TCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCTT 817943 Query 130702 CATACTTTTATCGTACA-ATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 ||| ||| ||| | ||| | || ||| ||| | | | ||||| || | | Sbjct 817944 CATGTCGAGATCCCACAGACCCATGTTGGTCAA-ATCCTGCAGAAGATGATGGTTCACCA 818002 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 || || || || | ||| ||||| ||| ||||| ||| |||| |||| || || | Sbjct 818003 CCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACG 818062 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 |||| |||||||||| |||||||| || | || || ||||| |||| | || | Sbjct 818063 ATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCG 818122 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 |||| |||| |||||| | | ||| ||| |||||| || |||| | ||| ||| | Sbjct 818123 AATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCG 818182 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATT 131000 | |||| | ||||||||||| || | || | ||||| || || | |||||| | Sbjct 818183 TCGGTT---CCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 818239 Query 131001 CGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGT 131060 || ||| ||||| ||| || | |||| || ||| ||||||| || |||| Sbjct 818240 CGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGT 818299 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 | || ||||||||| ||||||| ||||| | || || | | ||| ||||| ||| Sbjct 818300 AGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGAT 818359 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTT 131180 | ||| | || || || || || | ||||| | || | || | ||| || || Sbjct 818360 AGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGC 818419 Query 131181 TTAAATTACATTTACGC-GAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGT 131237 | ||| | ||| | | | ||| |||||| || | ||||| ||||||| Sbjct 818420 GCATATTGGA---GCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGT 818476 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||||||| ||| | | | ||| |||| || | || ||| |||| Sbjct 818477 TCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT---TT 818533 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 | || | |||||||| || | || || |||||||| || || || || | Sbjct 818534 TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCAT 818593 Query 131358 CATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 | | ||| | |||| ||||| || | |||||| || | || |||||||| | Sbjct 818594 CCT--TCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGAT 818651 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 ||| || || || |||||| ||| | |||||||||| |||||| || ||| || Sbjct 818652 ATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGT 818711 Query 131476 TTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATTTG 131533 ||| || || | ||| || | | | || | || | | || || || | Sbjct 818712 TTCCACCTGCGATTCGATGA--TCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATA 818769 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 | | || ||| ||||| ||||| | | || || | || ||| | | || Sbjct 818770 AAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC---CCAGGTG 818826 Query 131594 TCC---AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 ||| | |||||| ||| || ||||| || ||||| ||||| || || Sbjct 818827 TCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACA 818886 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 |||| ||| |||| ||||| | ||| | ||||| |||| || | || ||| Sbjct 818887 CGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCC 818946 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || | |||| |||| || | ||| || || || || ||||||| || || Sbjct 818947 TCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCG 819006 Query 131771 AAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATG 131827 | ||| | || | ||| || ||| || || || |||| || | || || | Sbjct 819007 AGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTA 819066 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 |||||||| ||||||| ||| ||| ||| |||||| | | || || || | ||| Sbjct 819067 TTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGAGATG 819126 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947 || | || || || | ||| ||| ||||| ||||| || || ||| | | || || Sbjct 819127 TACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAA 819186 Query 131948 ATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGG-CAATGTC 132006 ||||| || || | | || |||| ||||| || || | ||| || ||| || ||| Sbjct 819187 ATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTC 819246 Query 132007 GACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCT 132066 || | ||||| || || | ||| | | ||| | || | ||||| || || Sbjct 819247 AAC-AGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATAGTTGGCGA 819305 Query 132067 GGCGTGTGTAAA 132078 |||||| ||||| Sbjct 819306 GGCGTGGGTAAA 819317 >seq1104 Length=7559990 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 5393899 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5393958 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| ||||| || |||||| | || |||||||| ||||| ||||| Sbjct 5393959 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394018 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | || || | ||||| |||| Sbjct 5394019 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCT-CAAC 5394077 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || |||||||||||||| || || |||||| Sbjct 5394078 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 5394126 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 5394127 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5394186 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || |||||||| ||||| ||||| Sbjct 5394187 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394246 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||| || | ||||| |||| Sbjct 5394247 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCT-CAAC 5394305 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || | || || |||||||||||||| || || |||||| Sbjct 5394306 TTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 5394354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 27013 AATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || || || |||| || | |||| ||| | || || || || || || || Sbjct 5393662 AATTAATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTA 5393721 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| || | |||| | || || ||||| || ||||| | || |||||||| ||| Sbjct 5393722 TAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGA 5393781 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || ||||| | ||||| || || |||||| |||| | || | || || | Sbjct 5393782 TCTGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAA 5393841 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||||| || || || | || || |||||||||||||| || || |||||| Sbjct 5393842 GGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 5393898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928112829968