Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq472 125 9e-24 >seq472 Length=2253382 Score = 125 bits (138), Expect = 9e-24 Identities = 455/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| || || || ||||||| || || | |||||||| ||||| Sbjct 818034 GTAAACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGA 818093 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| || || || |||| || | || ||| ||| Sbjct 818094 AGCCGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTC 818153 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG- 110883 ||| | | |||||| | || | | | |||| | |||| |||| || |||| Sbjct 818154 CTTCAACTCGGCCCAGTTCCACAGATCCG-TCGGTTCCTTGTTCC-ACATCTCGTACTGC 818211 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| |||||| | | ||| ||||| | || || || | || | | || Sbjct 818212 AAGATGCCCTTGCT-CACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGC 818270 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 ||| ||||||||||| ||||| | ||| || |||||||| || || | ||| | Sbjct 818271 CAACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAG 818330 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || | || || || || | | ||||| || || || |||| || | || Sbjct 818331 CTTTTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCC 818390 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120 || || || | || || || ||||| |||||||| || ||| || ||| || Sbjct 818391 CTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAG---CGCTTAGCCTCCGGCAC 818447 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| |||| ||||||| | ||| ||||| || || |||| | || ||| Sbjct 818448 GGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTC 818507 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 | || ||| || | ||| | || | |||| || ||| || | | |||||| Sbjct 818508 CTTCAGCTTTGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGAT 818564 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || |||| |||||| || || ||||||||| | |||||| | ||| || || || Sbjct 818565 CGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCA 818624 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||||| || || || || | ||||| |||||||| || ||||| ||||| Sbjct 818625 CAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATC 818684 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 |||||| |||||||| || || || ||| ||| |||| || Sbjct 818685 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGA 818728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022469614400