Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq472 96.9 4e-15 seq305 95.1 1e-14 >seq472 Length=2253382 Score = 96.9 bits (106), Expect = 4e-15 Identities = 782/1248 (63%), Gaps = 35/1248 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || || || | ||| ||||||| |||| | ||| || || | | Sbjct 817690 CGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTC 817749 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAG---GTTCATACTTTGGGATTGATCGATG 117953 | |||| | |||| ||| || | | ||| | ||| || |||||||| Sbjct 817750 AGCTTGCCATAGTTTGGC---TCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATA 817806 Query 117954 AA-GCGTCCCCGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAG 118011 || ||| || ||||| || ||||| | || ||| | |||| | ||| ||||| || | Sbjct 817807 AACGCG-CCACGATCTGCGGCCATTTTGATGCACGTT-TTCACCGAGATCTCCCATACCG 817864 Query 118012 TCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCG 118071 | |||| |||| ||| || | || ||| || | || |||||||| |||||| Sbjct 817865 TTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTG- 817923 Query 118072 CCTTGACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCT 118128 ||| || | || |||||| || ||| ||||| || || | | ||||| Sbjct 817924 --TTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT 817981 Query 118129 CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 118188 || ||||| | || || || ||||| |||| || ||| || || | | Sbjct 817982 GCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGT 818041 Query 118189 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 118248 | | |||||| ||||| || | |||||||| || | ||||| || ||||| || || | Sbjct 818042 TCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCG 818101 Query 118249 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG 118308 |||| || |||| || || || || | || | | || |||||| | Sbjct 818102 GCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACT 818161 Query 118309 CGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 || |||||| | || | | | | ||| | |||||| || |||| | ||| || Sbjct 818162 CGGCCCAGTTCCACAGATCCG--TCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCC 818219 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 | | | | || ||||| | ||||| || || || || | ||||| || | Sbjct 818220 CTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACA 818279 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG- 118485 |||||| || || || ||| || || ||||| || || | ||| | || || | Sbjct 818280 GCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTA--GCTTTTGA 818337 Query 118486 -CCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGAC 118543 |||| ||| || ||| || ||| || || || |||| || | || || || Sbjct 818338 GCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCAC 818396 Query 118544 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAA 118603 |||| || || || | || | |||||| || | ||| | ||||||||| | Sbjct 818397 GCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTA 818456 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 ||| ||| || | | || ||||| || || ||| | || ||| | ||||| Sbjct 818457 ATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTT 818516 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | | ||| | | | |||| || ||| || | | |||||| || ||||| Sbjct 818517 TGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAG 818573 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 ||| || || | ||||||||| | |||||| | ||| || ||||||||||| || Sbjct 818574 ATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGA 818633 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT--GTGTTACACGCATCCTTGTAA 118841 || || |||||||| | |||| || || ||||| || || ||||||||||| Sbjct 818634 ACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATCCTTGTAC 818691 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCA 118901 |||||||| || || || ||| || || | || || || ||| | ||| Sbjct 818692 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGC 818751 Query 118902 GCTGGCACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 || ||| || || | || ||||||| ||||||| ||||| || || || Sbjct 818752 GCCTTCAC-CTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAA 818810 Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 |||||| ||| || || || ||||| || | | ||||| | || ||| Sbjct 818811 CTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACAT 818870 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 | | |||| || |||| |||||| ||||| || |||||||| || Sbjct 818871 TTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGC 818918 >seq305 Length=4704006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||| | | ||| || ||||||||| | || ||||| || || || Sbjct 1845460 GTGAAGATGTACCTGGGGCTGG-CGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 1845518 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || | || |||||||| ||||| || | ||||| | |||| |||| Sbjct 1845519 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 1845578 Query 179157 AATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGC 179216 ||||| ||| || | || ||||||||||| || ||||| |||||||| | | Sbjct 1845579 GATCGTCGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACC 1845638 Query 179217 CGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCAC 179276 |||| ||| |||||||| | ||| |||| || | |||||||| |||| ||| Sbjct 1845639 GGCCAGCTGGGCCACCTTTACCTCGCGCTTGTCGTCACGCTTGAAGCACGTGTACAGCAC 1845698 Query 179277 CTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 ||| | || ||||| | ||||| |||| || ||||| ||| Sbjct 1845699 CTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGC 1845747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425815245840