Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq472 309 3e-79 seq328 82.4 8e-11 >seq472 Length=2253382 Score = 309 bits (342), Expect = 3e-79 Identities = 1126/1734 (65%), Gaps = 60/1734 (3%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTC----CCGCGAGTCCGCGAGACATA 19173 ||||| || || | |||||||||||||| ||| || | |||| |||||| || Sbjct 819395 ATGCGCGTTGCTATTGGCATCCATGGCGAGGACATCGATGCAGCGAT----CGAGACCTA 819340 Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233 | | ||| || | || | ||| || ||||| |||| || | || || | || Sbjct 819339 CAATCTGCTGTCCGAGCGTTACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCCAC 819280 Query 19234 GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293 | | || ||| | ||| ||| ||||| || | ||| || || ||||||||||| Sbjct 819279 GCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGG 819220 Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 ||||||||| ||||| ||| |||| || | || || |||| | |||| || ||||| | Sbjct 819219 CATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACT 819160 Query 19354 CCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCG 19412 || ||| | |||||| ||| || || ||| || |||||||| || | Sbjct 819159 GAACGTGCACTG-TATCCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATATCGA 819101 Query 19413 ACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGG 19472 ||||| | || || ||||| ||||||| |||||| ||||| |||||||| | ||||| | Sbjct 819100 ACGGTCTGGTGCCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTG 819041 Query 19473 GCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGG 19532 || ||| || || | ||||||||||| |||||||| ||||| | || | | | Sbjct 819040 GCAACAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCG 818981 Query 19533 ATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCA 19592 | || ||||| ||| ||| || | |||||| | ||| || ||| | || Sbjct 818980 AGTTTCTCGATCTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTT 818921 Query 19593 CGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACC 19652 || | ||||| |||||||| |||||| || || ||| | ||||| ||| || Sbjct 818920 ACGCACTCTGGATACCGGACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCC 818861 Query 19653 TGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGT 19712 |||||||||||||||| || || || ||| | ||| || ||||| | |||| | || Sbjct 818860 TGATGTGCCCGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGC 818801 Query 19713 TGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCT 19772 ||||| | |||| |||| || || | | | ||| ||| | ||| ||| Sbjct 818800 TGTACACGGGGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGA--TCT 818743 Query 19773 G-GGACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGA 19830 | || ||| || || || ||||| || |||||| |||||||||| |||||||| Sbjct 818742 GTGGTTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGA 818683 Query 19831 CGC-CGCGAACG-CCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888 || || | || |||| || ||| |||| |||||| | ||||| | |||||| || Sbjct 818682 TGCTTGCAATCGTAAAAGT--AACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTG 818625 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || ||||| || ||||| || | ||| ||| || || || |||||||| || Sbjct 818624 TGCACTGAGATTGTGGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCG 818565 Query 19949 CTGTGCCTGCCGACTTTCGTCAAG---GCCTCCTCCTTCGACTTTGCCAAATTGTACGAG 20005 | | || | || || ||| | | | | |||||||| || || | || Sbjct 818564 ATCGCCTTGAACATGTTTGTAAAGCAAGACAAAACGTATGACTTTGCAAAGCTGAAGGAA 818505 Query 20006 GTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---G 20062 || | | ||| ||||| |||||||| |||| ||| || | || || | Sbjct 818504 GTCGCTAAGACCGTAACGCGCAATCTGAACAAAATCATTGATGTCAATTACTATCCCGTG 818445 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | ||||| |||| || |||||||||||| ||||||||| ||||||||| |||||| Sbjct 818444 CCGGAGGCTAAGCGC---TCCAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGC 818388 Query 20123 CTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGC----GCG 20177 ||||||| | ||||| || | || | | ||| | | | |||| | || Sbjct 818387 ATGGCCGATGCGTTCATCCTGATGCGCTATCCGTACGA-AAGCGAAGAGGCTCAAAAGCT 818329 Query 20178 AGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCG 20234 | ||||||| || ||||| || | ||| ||| || |||||| || || | Sbjct 818328 AAATCAACAA----ATATTCGAAACCATCTACTACGGCGC---GCTGGAAGCGAGCTGTG 818276 Query 20235 AACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTA 20294 | | ||| || || ||||||||||||| | |||| || | | | |||| | Sbjct 818275 AGTTGGCCGCTCGAGATGGACCGTACGAGACGTACGAGGGCAGTCCGGTGAGCAAGGGCA 818216 Query 20295 TCCTCCAGCCGGACATGTGGGGC--GTCACTGA-GAATGAGT---TTTGGAGCGCCCTCA 20348 || | ||| || |||||| | | || || | || || ||| || | | Sbjct 818215 TCTTGCAGTACGAGATGTGGAACAAGGAACCGACGGATCTGTGGAACTGGGCCGAGTTGA 818156 Query 20349 AGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCG 20408 ||| ||||| | ||||| ||||||| ||| |||| | || || |||||||| | Sbjct 818155 AGGAAAAGATCGCCAAGCACGGCATTCGCAATTCGCTGCTGTTGGCCCCGATGCCGACGG 818096 Query 20409 CCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCT 20468 | || || || || || | || ||||| || | ||||||||||||||| | ||| | | Sbjct 818095 CTTCCACGGCACAAATTCTCGGCAACAATGAATCGTTCGAGCCGTACACGTCGAACGTTT 818036 Query 20469 ACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACT 20528 || | || ||| | || |||||| |||| ||| | || || | | || | Sbjct 818035 ACAATAGGCGCGTGCTGTCGGGCGAGTTCCAGGTGGTGAACCATCATCTTCTGCAGGATT 817976 Query 20529 TGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAAT--TGTCCGAGCCGGCGG 20586 || || || | | ||||| | | | || ||||| ||||| ||||| | | Sbjct 817975 TGACCAACATGGGTCTGTGGGATCTCGACATGAAGAACGAAATTCTGTCCAA---CAATG 817919 Query 20587 GAGCG-TCC-AGGCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTAT 20642 || || ||| | ||| || ||| || ||| | | ||| | |||| || |||| Sbjct 817918 GATCGATCCAAAAGATTGCGGCTATACCGCAGGAAATTCGCGACCTGTACAAAACGGTAT 817859 Query 20643 GGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACC 20702 |||| ||| | ||| | |||| | ||||| || ||||| ||||| | ||||| | Sbjct 817858 GGGAGATCTCGGTGAAAACGTGCATCAAAATGGCCGCAGATCGTGGCGCGTTTATCGATC 817799 Query 20703 AGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCATG 20761 |||| || ||| |||| | | | | | | || | | |||| ||||||| || || Sbjct 817798 AGTCGCAATCGTTCAACATTCACGTCGCGGAGCCAAACTATGGC-AAGCTGACGTCGATC 817740 Query 20762 CATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 ||| | || |||||| | | ||| | || || ||||||||||||||||| ||| Sbjct 817739 CATTTCTATGGCTGGAAGATGGGATTGAAAACTGGCATGTACTATCTGCGTACC 817686 Score = 266 bits (294), Expect = 4e-66 Identities = 1132/1757 (64%), Gaps = 56/1757 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| |||||||||||| || || | ||| ||||||| || || | || || | Sbjct 817687 GTACGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGAC 817746 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAG---ATGTTGAGCGACTGGGACTGGTCG 78306 | ||||||| ||| | | || |||| || | ||||||| ||| || ||||| ||| Sbjct 817747 GTCAGCTTG-CCATAGTTTGG--CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCG 817803 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 || |||| || || || || ||||| | |||| || || || |||||||| | Sbjct 817804 ATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACC 817863 Query 78367 GTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCC---AGCGCTTGTA-CGCTCCCACC 78422 || ||| | | | | || | | | || || | | ||| | || ||| | Sbjct 817864 GTTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCC-ATT 817922 Query 78423 GGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCG 78482 | || |||||| ||||| || | | | ||| || || || | |||| | Sbjct 817923 GTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTG 817982 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 | || || |||| | || ||||||||| | ||| || | ||| | ||| Sbjct 817983 CAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTT 818042 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | ||||||||||||||| | || ||||| || | || || || || || || ||||| Sbjct 818043 CGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGG 818102 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTA---- 78658 ||| || || | ||| || ||||| |||| || ||| | ||||| |||| | Sbjct 818103 CATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTC 818162 Query 78659 GGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTC 78716 |||| || ||| | || ||| | | |||||| || || | ||| |||| Sbjct 818163 GGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTT 818222 Query 78717 GGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA 78776 | | |||| |||| | |||||||||| | ||| || ||| | || || Sbjct 818223 GCTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCT 818282 Query 78777 CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC----GCG 78832 | | ||| || ||| ||| | | ||||| || ||||||| | || | | Sbjct 818283 CGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATAT----TTGTTGATTTAGCTTTTGAG 818338 Query 78833 CCTTGGTCTCGT-CGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACG 78891 ||| || | | || ||| | || | || ||||| ||||||||| |||||| ||| Sbjct 818339 CCTCT-TCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACG 818397 Query 78892 CCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGGTCGGGTAA 78948 ||||| ||||||| | ||||||||| ||| | ||| ||| | ||| |||| Sbjct 818398 CCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAA 818457 Query 78949 AAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAAT 79008 || ||| |||| |||||| || ||||| ||| | || || || | || Sbjct 818458 ---TTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGC 818514 Query 79009 TTGGCGAAATCAAAATGATTTCCTTTGATG---AAAGTCGGT--AGGCACAGCGATGCCA 79063 || || || ||| | | ||| ||| | ||| | | |||| | ||| |||| Sbjct 818515 TTTGCAAAGTCATAC-GTTTTGTCTTGCTTTACAAACATGTTCAAGGCG-ATCGAGGCCA 818572 Query 79064 GGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAATT 79121 | ||||| || || ||| ||| | | || | ||| | || || |||||||| || Sbjct 818573 GATTGCATACCGCTACCTCATCCTTCGACGAGTA--CTCCACAATCTCAGTGCACAAGTT 818630 Query 79122 AGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 || | |||||||||||||| |||| |||||| || || || || || |||||||| Sbjct 818631 GGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTA 818690 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCC-CAGATGTCC 79239 ||||||||| ||||| || ||||| | || || ||| || ||||| || Sbjct 818691 CAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGAT--CC 818748 Query 79240 CGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTG 79299 | ||| || | | | | ||||||| | ||||| | ||||| || | | Sbjct 818749 TGCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCG 818808 Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAG 79359 || | || || || || | || || || || |||||||||||||||||| ||| Sbjct 818809 AACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCAC 818868 Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 |||| | ||| || || |||||| |||||||| ||||| || || || | | Sbjct 818869 ATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATG 818928 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 || || || | |||||| | ||| ||| ||| |||||||| || | || Sbjct 818929 TCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATA 818988 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 || | ||||||||||| |||||||||||||| | || |||||| ||| ||||| Sbjct 818989 TCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGA 819048 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | ||||||||| ||||| |||||| | || || ||||| ||||| | |||| | | Sbjct 819049 TCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATC 819108 Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGAT 79658 |||||||| ||| ||| || || |||| || || | ||| || | |||||| Sbjct 819109 CCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGAT-ACAGTGCACGTTCAGTCCGAT 819167 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 ||| |||| | |||| || || | || |||| ||| ||||| |||||||||||||| || Sbjct 819168 GCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 819227 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGC 79778 || || ||| | | |||||||||| ||| | ||| || | ||| | || Sbjct 819228 GCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGC 819287 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCAGATCGTACGTCT 79837 || | || |||| ||||| || ||| ||| | || || ||||| ||| |||| Sbjct 819288 CGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGG-ACAGCAGATTGTAGGTCT 819346 Query 79838 CCTTGACGC-GC-GGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTA 79895 | | ||| || || ||| ||||| |||||||| | || |||||||| | | || Sbjct 819347 CGAT--CGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTG 819404 Query 79896 CTGGGGCGTCTCGCCGA 79912 |||||| |||| ||| Sbjct 819405 CTGGGGGCGCTCGACGA 819421 >seq328 Length=4755327 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 ||||| || |||| | || || ||||||||| || ||| || || |||||||| Sbjct 1649310 GCTTTCGC-TGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCT 1649368 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||||||||| |||||||| || | ||||| ||||||||||| || || ||||| Sbjct 1649369 GAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGA 1649428 Query 60110 GGGCCTCCA 60118 || || || Sbjct 1649429 AGGGCTGCA 1649437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516476136160