Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq472 248 1e-60 seq305 170 2e-37 seq328 158 1e-33 >seq472 Length=2253382 Score = 248 bits (274), Expect = 1e-60 Identities = 477/700 (68%), Gaps = 4/700 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||| ||||||| |||| || | ||| | | || ||| | ||| Sbjct 819320 TACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCCACGCAGCGTCCCCAGCTTTCG 819261 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||| || | ||| || || || || ||||||||||| ||||| ||| Sbjct 819260 TCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAG 819201 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 ||||||||| || || |||| | | ||||| ||||| | || ||| | | | ||| Sbjct 819200 CAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACGTGCACTGTA--TCC 819143 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| || |||||||| | | | || | ||||| |||| Sbjct 819142 GCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATATCGAACGGTCTGGTGCCGATGC 819083 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||||| |||||| ||||| ||||||||| | |||||||| ||||| || Sbjct 819082 TGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAG 819023 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||||||||| |||||||||||||| | || || | ||||||||||| ||| Sbjct 819022 CATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGA 818963 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 818962 AAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGG 818903 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||||| |||||| | |||| |||| ||||||||||||| |||| | Sbjct 818902 ACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCGCACGATT 818843 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 | ||||| || || || || || ||||| | || |||| | ||||| Sbjct 818842 GTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGA 818783 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 |||| |||| | | | |||| ||||||| || | ||| ||| ||| || | Sbjct 818782 AAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAAT 818723 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 |||||||| || || ||||||||| ||||||||| | ||| || || | Sbjct 818722 CGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTA 818663 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||| |||| |||||| |||||||| |||||| || Sbjct 818662 ACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTG 818623 >seq305 Length=4704006 Score = 170 bits (188), Expect = 2e-37 Identities = 294/421 (70%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||| | | || |||||||||||||| ||||| Sbjct 1846194 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTC 1846253 Query 152802 AAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA--CGT 152850 ||||| |||||||||||||||| | || |||| |||| |||||| | | Sbjct 1846254 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCTTCAGGTCGTCCAT 1846313 Query 152851 AGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATT 152908 |||| ||| ||| | ||| || || ||||||||||| | || ||| || || Sbjct 1846314 CGTGAG--GTACTTCTT--CTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTT 1846369 Query 152909 CCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGA 152968 || |||| || | ||| || ||| || || || || || || |||| || || | Sbjct 1846370 CCGCATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCA 1846429 Query 152969 GTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTT 153028 | |||||||||||| ||| || ||| || || || | ||| |||| | || || | || Sbjct 1846430 GCGGAAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTT 1846489 Query 153029 TCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCC 153088 | |||||||| |||||||||| |||||||| |||| | | || | | ||||| Sbjct 1846490 TGGCCGAGTCTCCCTCGGTGAGGATAAGCGTGCAGTTGAGCGAGTTGCGCGAGCCGGCAT 1846549 Query 153089 AGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTT 153148 ||| ||||| || ||||| ||||| ||| ||||| | |||||| |||||| |||| Sbjct 1846550 CGTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGATTTCTTCGAGCCGGACGTTT 1846609 Query 153149 T 153149 | Sbjct 1846610 T 1846610 Score = 143 bits (158), Expect = 3e-29 Identities = 283/411 (69%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || ||||||||||| || || |||||| Sbjct 1846195 AGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTCC 1846254 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||||||||||| ||||||||| | ||| ||||| || Sbjct 1846255 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCT-TCAGGTCGTCCAT 1846313 Query 118094 --TAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 | | || | | ||| || || ||||||||||| | || ||| || |||| | Sbjct 1846314 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTTCCGC 1846373 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || || || || || ||||| || ||||||| ||||| || Sbjct 1846374 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 1846433 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| || |||| || || || || | || |||| | || || | || || Sbjct 1846434 AAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTTTGGC 1846493 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | ||||| ||||| | | | | |||| ||| ||||| Sbjct 1846494 CGAGTCTCCCTCGGTGAGGATAAGCGTGCAGTTGAGCGAGTTGCG-CGAG--CCGGCATC 1846550 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| | || ||| || || || || Sbjct 1846551 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGATTTCTTCGAGCC 1846601 Score = 114 bits (126), Expect = 1e-20 Identities = 285/429 (66%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| |||||||| || || || || ||||| | |||||| | || || | || Sbjct 1845305 ACCCAGTGCCGATACCGTCCGCCCCGTTGATCAGCAGCATCGGAATGATCGGCAGATACC 1845364 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGAC--GTACTTGAGCACCGCATTGTCACT 117267 | | ||||| | || || || || || || ||||| |||| || || ||| Sbjct 1845365 AAACCGGCTCGATGCGCTGATTATCCTC-GT-ACTGGTACTCCAGCAGCGGATCGTCGAG 1845422 Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 ||||| ||| |||| | ||| || | || ||||| ||||| | | ||| || Sbjct 1845423 CGGATGGAAGATGTGCCGCGTCAGCGCGGACAGCATCGTGAAGATGTACCTGGGGCTGGC 1845482 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| | || ||||||||||| || || | ||| | || || || | Sbjct 1845483 GCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGAT 1845542 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||||| ||| || |||| || |||| ||||| ||||| ||| | ||| Sbjct 1845543 GTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTCGAGCAGAGCGACATCTC 1845602 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || || | || |||||||| | || |||||||| |||||||| | || Sbjct 1845603 GCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTTACCTC 1845662 Query 117508 -----TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTC 117562 || ||||| | ||||| ||| | || | |||||||||||| | |||||| Sbjct 1845663 GCGCTTGTCGTCACG-----CTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTC 1845717 Query 117563 AGACCATCC 117571 | || ||| Sbjct 1845718 AACCCGTCC 1845726 Score = 113 bits (124), Expect = 5e-20 Identities = 209/305 (69%), Gaps = 14/305 (5%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| | || |||||| ||||||||||| | ||||||||| || ||||| Sbjct 1845459 CGTGAAGATGTACCTGGGGCTGGCGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 1845518 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || | || || |||| ||||||| ||| ||| | ||||| |||| || | Sbjct 1845519 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 1845578 Query 152148 AATCGTGCCCTGCAGA--CTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 ||||| | ||||| | || ||||| || || || | || ||||| | | Sbjct 1845579 GATCGT--CGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAA 1845636 Query 152206 CCCGCCAACTGCGCCACCTTCATGTC-----CGTCGTCAGGTTCTTCTTGAGACAGGCGT 152260 || |||| ||| |||||||| | || ||||||| | ||||| || | || Sbjct 1845637 CCGGCCAGCTGGGCCACCTTTACCTCGCGCTTGTCGTCACG-----CTTGAAGCACGTGT 1845691 Query 152261 AAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGA 152320 | | ||||||||||||| || ||||| ||||||| || | ||||| || ||| | Sbjct 1845692 ACAGCACCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGCACGT 1845751 Query 152321 TGTCC 152325 ||||| Sbjct 1845752 TGTCC 1845756 >seq328 Length=4755327 Score = 158 bits (174), Expect = 1e-33 Identities = 261/372 (70%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| || | |||||| || ||||| | |||||||||||||| Sbjct 877932 CGCCTGCTCGACAAACTCCCGCACCGAGTGCGTTTCGCCCGTCGCGATCACGAAATCTTC 877873 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| |||||||| || | ||||||||||| ||||| ||||| Sbjct 877872 CGGCCGCTCCTGCTGCATCATCAGCCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCA 877813 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||||||||| | || || || || ||||| | || |||||| | || Sbjct 877812 GTCGCGCTTCGAGTCGAGATTGCCCAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTT 877753 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 || || | | | || || ||||||||||| || | || || ||| ||||| Sbjct 877752 GGCCACCGAGC---GGGTGATTTTGCGCGTCACGAAGTTCTCCCCCCGGCGCGGCGACTC 877696 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 ||| |||||||| ||||| | || || ||||| |||||| ||||| ||||| || Sbjct 877695 GTGATTGAACAGGATGCCGTTGCAGGCGAACATGTCGTACGCTTCGCGATAGTTGATCAC 877636 Query 124775 CATCCAATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| ||||| | | ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 877635 AATCCAGTACCCGTACATCTTGGCACACG-CGTACGGCGAGCGGGGATAGAACGGGGTCT 877577 Query 124834 TTTCATTTTGGG 124845 |||| || |||| Sbjct 877576 TTTCGTTCTGGG 877565 Score = 118 bits (130), Expect = 1e-21 Identities = 229/331 (69%), Gaps = 9/331 (3%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || ||||| ||||| || || || || | ||| || | ||| ||||| Sbjct 877905 GTGCGTTTCGCCCGTCGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATCAGCCA 877846 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||||||||| |||| |||||| |||||||||||||| | || | || || || Sbjct 877845 CATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCCCAG 877786 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA--CTCAGCCAGACCGAGC--GTGATCTTGCGC 159132 ||| | | ||| | | | | | || ||| ||||||| ||||| |||||| Sbjct 877785 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCC--ACCGAGCGGGTGATTTTGCGC 877728 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||||| || | | || || || |||||| || || ||||| |||||| | || ||| Sbjct 877727 GTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGCG 877668 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG-AGAC 159251 |||| || || | ||||| || || | |||||||| || | | ||||| | || Sbjct 877667 AACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACAC 877608 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTC 159282 | |||| || || ||||| || || ||| Sbjct 877607 G-CGTACGGCGAGCGGGGATAGAACGGGGTC 877578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207695997200