Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1104 109 3e-19 seq250 91.5 9e-14 >seq1104 Length=7559990 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| ||||| ||||| || |||||||| || || || || || Sbjct 5393680 AGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5393739 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | |||||| || || ||||| | ||||||| Sbjct 5393740 CCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5393799 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || || | ||| || || ||| ||||||| ||| Sbjct 5393800 TTGTCCTGGATC-TTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGT 5393858 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | |||||||| ||||||||||| Sbjct 5393859 GATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 95.1 bits (104), Expect = 8e-15 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| ||||| ||||| || |||||||| || || || || || Sbjct 5394136 AGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5394195 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || ||||| | ||||||| Sbjct 5394196 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5394255 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || || | ||| || || || | ||| ||||||| Sbjct 5394256 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATAGTATC--CGATGGCTCAACTTCCAGA 5394312 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || ||||| | |||||||| ||||||||||| || Sbjct 5394313 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATT 5394356 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| || |||||||| || || || || || Sbjct 5393908 AGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5393967 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || | |||||| || || ||||| | ||||||| Sbjct 5393968 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5394027 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || || | || || || || | ||| || |||| Sbjct 5394028 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATCGTATC--CGATGGCTCAACCTCCAGA 5394084 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | |||||||| ||||||||||| Sbjct 5394085 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 >seq250 Length=5469655 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| || || |||||| || ||||| ||||| || || || || Sbjct 3557638 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGG 3557579 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || ||||| | ||||||| Sbjct 3557578 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 3557519 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || || || | ||| || || | ||| Sbjct 3557518 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 3557460 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || ||||| || | ||||| || || |||||||| |||| Sbjct 3557459 AATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGA 3557416 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| || || ||||| |||||||| || || || || || || Sbjct 4640803 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 4640862 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || || || | || ||| Sbjct 4640863 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 4640922 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||| | || || | || ||||| ||| || || | || Sbjct 4640923 TTGTCCTGGATCTTT-GCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGT 4640981 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| | |||||||| |||||||||||||| Sbjct 4640982 GATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 4641023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724943378862