Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1104 170 4e-37 seq250 154 3e-32 seq327 140 8e-28 >seq1104 Length=7559990 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| ||||| || || ||||||||||| |||| ||||| | |||||| Sbjct 5393914 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5393973 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || || || | ||| ||||||||| Sbjct 5393974 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5394033 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| || || || |||||||| |||||||| ||| Sbjct 5394034 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTC 5394093 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || | |||||| Sbjct 5394094 TTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| || || || ||||||||||| |||| ||||| | ||||| Sbjct 5394142 AGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 5394201 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || || || | ||| ||||||||| Sbjct 5394202 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5394261 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || || || || ||||| || |||||||| ||| Sbjct 5394262 TGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTC 5394321 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| || || || | |||||| || Sbjct 5394322 TTTCCGGTCAGAGTTTTCACGAAAATCTGCATATT 5394356 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| || || || ||||||||||| |||| ||||| | ||||| Sbjct 5393686 AGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 5393745 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || || || || || | ||| ||||||||| Sbjct 5393746 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5393805 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||| || || || || || || ||||| || || ||||| ||| Sbjct 5393806 TGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTC 5393865 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || | |||||| Sbjct 5393866 TTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 >seq250 Length=5469655 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || |||||||| ||||| | || || | ||||| Sbjct 3557632 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCC 3557573 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || || | ||| ||||||||| Sbjct 3557572 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 3557513 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| || || ||| || ||||| || || || ||| Sbjct 3557512 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 3557453 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| || || || || | |||||| || Sbjct 3557452 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 3557418 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || || ||||| || || || || || ||||| || || | || || Sbjct 4640799 ACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGT 4640858 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||||||||| |||||||| || || || || || || |||| || Sbjct 4640859 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 4640918 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| ||||| || ||||| ||||| || || ||||| || Sbjct 4640919 TTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAG 4640978 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || ||||| || || || || | |||||| || Sbjct 4640979 TGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 4641023 >seq327 Length=13998812 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| | ||||| || |||||||| || || | | ||| | ||| || Sbjct 3501141 AGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCC 3501082 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || ||||||| || ||||| ||| Sbjct 3501081 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCC 3501022 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || || ||||| || ||||| ||| Sbjct 3501021 TGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTC 3500962 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3500961 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3500930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133970115110