Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq250 107 1e-18 seq1104 100 2e-16 >seq250 Length=5469655 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 3557418 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3557477 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || | | ||||| || || | |||||||| Sbjct 3557478 TCGGATACGATCGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGA 3557536 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | ||||| | |||||| Sbjct 3557537 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTA 3557596 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 3557597 CAACATCCAGAAGGAGTCGAC 3557617 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| ||||| || || || ||||| || || || || | Sbjct 4641023 AACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 4640964 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | ||| || ||||| ||||| | || ||||| Sbjct 4640963 TCGGACACGATCGAGAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4640905 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | |||||| | ||| || Sbjct 4640904 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 4640845 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 4640844 CAACATTCAGAAGGAATCGAC 4640824 >seq1104 Length=7559990 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || ||||| || ||||| || |||||||| | | Sbjct 5393897 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCC 5393838 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | ||| || ||||| || || | ||||||||||| Sbjct 5393837 GATACGATTGAGAATGTGAAGGC-AAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5393779 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || ||||| || | ||||| | || || || Sbjct 5393778 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 5393719 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | ||| | ||| | | |||| || ||| Sbjct 5393718 CATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGA 5393670 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| || || ||||| || |||||||| |||||||| | Sbjct 5394356 AATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCCA 5394297 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| ||| |||| ||| | || | || || ||||| || || | |||||||| Sbjct 5394296 TCGGATACTATTGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCGCCAGA 5394238 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || || || || ||||| || | ||||| | || || Sbjct 5394237 TCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTA 5394178 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || || || || | ||| | ||| Sbjct 5394177 TAACATCCAGAAGGAATCGACTCTTCATCTGGTT 5394144 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || ||||| || |||||||| || ||||| | || Sbjct 5394125 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCG 5394066 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| || || | ||||||||||| Sbjct 5394065 GATACGATCGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 5394007 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||| | ||||| | || || || Sbjct 5394006 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5393947 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || ||||| | ||| | ||| Sbjct 5393946 CATCCAGAAGGAATCCACCCTTCATCTGGTT 5393916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004598936712