Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1104 161 2e-34 seq250 156 1e-32 seq327 118 3e-21 >seq1104 Length=7559990 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || ||||| || ||||| || || || Sbjct 5394122 CAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCGGAT 5394063 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 5394062 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5394003 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| |||||||| | || || | || |||||| || Sbjct 5394002 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5393943 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||||| ||| Sbjct 5393942 CAGAAGGAATCCACCCTTCATCTGGTT 5393916 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || |||||||| || || || || || Sbjct 5393894 CAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCCGAT 5393835 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||| |||||||| || |||||||| || || ||||| Sbjct 5393834 ACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5393775 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || ||||| | || || | || |||||| || Sbjct 5393774 CGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATC 5393715 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||||| ||| Sbjct 5393714 CAGAAGGAATCGACTCTTCATCTGGTT 5393688 Score = 145 bits (160), Expect = 2e-29 Identities = 163/217 (75%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||| | || ||||||||||||||||| || ||||| || ||||| || || || || Sbjct 5394359 TAAAATA-TGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGA 5394301 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || || || ||||| || || ||||| |||||||| || |||||||| || Sbjct 5394300 GCCATCGGATACTATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCC 5394241 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || ||||| || || |||||||| ||||| ||||| || ||||| | || || | || Sbjct 5394240 AGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGA 5394181 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| |||| || ||||| || || ||||| ||| Sbjct 5394180 CTATAACATCCAGAAGGAATCGACTCTTCATCTGGTT 5394144 >seq250 Length=5469655 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 4641017 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 4640958 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| |||||||| ||||| || || || || ||||| Sbjct 4640957 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 4640898 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| |||| || ||| | Sbjct 4640897 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATT 4640838 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || ||||| || || ||||| Sbjct 4640837 CAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTC 4640802 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 3557424 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 3557483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 3557484 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 3557543 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || ||||||| ||| || Sbjct 3557544 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAACATC 3557603 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 3557604 CAGAAGGAGTCGACCCTTCATCTGGT 3557629 >seq327 Length=13998812 Score = 118 bits (130), Expect = 3e-21 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 3500933 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 3500992 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| ||||| || || || || ||||| || ||||| Sbjct 3500993 ACGATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCAGCAG 3501052 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || ||||| || || ||| | || |||| |||| || ||| | Sbjct 3501053 CGTTTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGTAC-CTTGTCCGACTACAACAT 3501111 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || || ||| | || || |||| || Sbjct 3501112 CCAGAAGGAGTCACCCCTTCA-CTTGGTT 3501139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712476713516