Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19 268 1e-66 >seq19 Length=3534686 Score = 268 bits (296), Expect = 1e-66 Identities = 824/1261 (65%), Gaps = 25/1261 (2%) Strand=Plus/Minus Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || || |||||||| ||||| || || ||||| || |||||||||||||| | | || Sbjct 2153869 GCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTC 2153810 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 || | || || || || || | || || | ||||| ||||| || || | Sbjct 2153809 AGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATG 2153750 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 || || || || |||||||| || || || | | | || ||| | ||||| || | Sbjct 2153749 CCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACC 2153690 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACA 53653 || || || ||||| || || ||||| || ||||| | ||||| | ||| | || Sbjct 2153689 GGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTC---TTGGCGACT 2153633 Query 53654 TCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAAT 53709 ||||||||||| |||||| | | |||| || | || |||||||||| || || Sbjct 2153632 TCCTTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCT-TCACGAACATGTTCAGCGCGAT 2153574 Query 53710 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTG 53767 ||||||||||| || || |||| |||| | | | || || | | || || ||| Sbjct 2153573 TGATGCCAGATTGCAGACCGCTATTTCATCCTTGGA--CGAGTACTCGACGATTTCCGTG 2153516 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || || || |||||||| || || | || ||||| || ||||| || |||||| Sbjct 2153515 CACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCA 2153456 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 ||||| || || ||| | || || || || | ||| ||||| || || || ||| Sbjct 2153455 TCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCAC 2153396 Query 53888 ACGACACGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA 53945 | | ||||||| | | | ||| | | || | ||||| ||| || | Sbjct 2153395 AGATCCTGAGCCTTGACCTGACGGATAA--ACCGGCCCTCCTTCTCGTAGCCTGTGTAGA 2153338 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 ||||||||| |||||||| || || ||| ||||| || | ||| ||||||| Sbjct 2153337 GCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCA 2153278 Query 54006 ACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 | |||| |||| || ||| || || | ||| || ||||| || | ||| || || Sbjct 2153277 AGCTCCACATCTCGTTCG-CCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCG 2153219 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 || | || | | | ||||| || || || ||||| || |||||||| ||| Sbjct 2153218 TAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAAC 2153159 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | ||| |||||||| || | ||| || | | | || || || ||||| Sbjct 2153158 TCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTG 2153099 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | || | |||||||| || || || | || ||| || | | || Sbjct 2153098 CCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCG 2153039 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 54302 ||||| || || || || | ||| || |||| | ||||| || | | ||| Sbjct 2153038 TTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTC 2152979 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | || || || || || ||| || || || | ||||| | || ||||| || || | Sbjct 2152978 A-AG-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAA 2152921 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 ||||||| || || || ||| ||| | || ||||| ||| ||| | || |||| Sbjct 2152920 TGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTT 2152861 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || | || ||| || ||||| || || |||||||| | || || ||||||| Sbjct 2152860 GTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGAT 2152801 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 | || ||||| || || | || |||||| ||||| || | || || ||||| | Sbjct 2152800 TATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCA 2152741 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||| ||||| |||| |||||||||||| || || ||||||| ||| || ||||| Sbjct 2152740 GCATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGTTCCA 2152681 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGA 54662 ||||| || |||||||| ||||| || || || || || || || | ||||| | Sbjct 2152680 GCGTTTTGAAGCCAAAATAATTGTAGCCGAAATCGCGATCATATATGATGGCAGAGTTCA 2152621 Query 54663 G 54663 | Sbjct 2152620 G 2152620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711425096080