Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 291 8e-74 seq8 149 6e-31 seq2 91.5 2e-13 seq7 82.4 8e-11 >seq10 Length=7496699 Score = 291 bits (322), Expect = 8e-74 Identities = 323/428 (75%), Gaps = 2/428 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || |||||||| || |||||||||| || |||||||||| ||||||||| |||| Sbjct 495766 TTCAATGCCATCGAAACACTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGG 495707 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 ||| | ||| ||||| ||| |||||||| |||| || || || |||||||||||| Sbjct 495706 ATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGAGGGC 495647 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 |||||||| || || ||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 495646 ATCTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCG 495587 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || |||| ||| |||||||| || || | |||||||| ||||| |||||||||||| Sbjct 495586 GGTTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACTTTGCC 495527 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA-GCGCGGCGCGCGTCAGGGAGATCGT 117246 ||| || |||||||| | |||||||| |||| |||| | || || | ||| | Sbjct 495526 TGTCTGATGTTCAAGTACCTGGTGCAGAAGCCGACGCGC-GAACGTGTGACCAGCATCAT 495468 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | ||| ||||| ||||||||| |||||||| | ||||| ||||| | |||| Sbjct 495467 CCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTCACGAAGGCGCTCCCGGTCGATATGCT 495408 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || || || ||||||||| |||||||||||||||||||| |||||||| | Sbjct 495407 CGGTATGAACTGTGATCTGATGTCGCAGTACATCGAGTTCGTCGCCGATCGGCTGCTGGT 495348 Query 117367 CGAGCTGG 117374 ||| ||| Sbjct 495347 GGAGTTGG 495340 Score = 255 bits (282), Expect = 6e-63 Identities = 220/270 (81%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 ||||||| || |||||||||||||| |||||||| |||||||| ||||||| || || | Sbjct 496142 AGGCCGAAGCATCGTTCTGGACCGTGGAGGAGGTCGACCTGTCGAAGGACATGAAAGATT 496083 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| |||| ||| | ||||| ||||||||| ||||||||| || ||||||||| Sbjct 496082 GGGAGGCGCT-GAAGCCGAGTGAGCGTCATTTCATCTCGCACGTGCTCGCATTTTTCGCC 496024 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||||||||||| ||||||||||||||||| || ||| |||||||||||||| Sbjct 496023 GCGTCGGACGGCATCGTTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTA 495964 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 |||| ||||| ||||||||||| || |||||||| ||||| ||||| ||| || ||| Sbjct 495963 ACCGAAGCGCGCTGCTTCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGATG 495904 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGC 116923 |||||| ||| |||||||||||| | ||| Sbjct 495903 TATTCGCTCCTGATCGACACGTACATCCGC 495874 >seq8 Length=9380469 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 4935970 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4936029 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| |||||||| || ||||| Sbjct 4936030 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 4936089 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | |||||| || ||||||| Sbjct 4936090 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTAC 4936149 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||| ||||||||| | || || ||||| ||| ||||| || | || |||| Sbjct 4936150 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTGCGTGGTGGCG 4936201 >seq2 Length=16623535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| ||||| || ||| | || ||||| || | || Sbjct 2043598 AACG-TCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGAT 2043656 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| || || |||||||| |||| || || || ||||||||||||||||||||| Sbjct 2043657 CTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGA 2043716 Query 40881 GGCCACGCTGCA 40892 | |||| || || Sbjct 2043717 GTCCACCCTTCA 2043728 >seq7 Length=10083987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || || ||||| | || ||||| || || || | || |||| ||| Sbjct 5670801 AAAAATGCAAATCTTTGTGAAAACTTTGACCGGCAAGACGATTACGCTGGATGTCGTAGC 5670860 Query 40746 CACCGACAGCG---TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 |||| | | || | | ||||| |||||| || |||||| || | | Sbjct 5670861 GTCCGAGACGGTATTGGACA---TCAAGAGCAAAATTGAGGAGCGAGAGGGTATAGCACC 5670917 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 |||||||| || |||||| |||||| || |||||||| || | ||| | | | ||| Sbjct 5670918 CGACCAGCAGCGCATCATCTTCGCGGGAAAGCAGCTGGAAGATGGGCGAATCATTTCCGA 5670977 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| | | ||||| |||| || || |||| Sbjct 5670978 TTACAATATCCAGCACGGCTCCACGATGCACCTGGTCCTGCG 5671019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210370430960