Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq19 152 4e-32 seq1 132 4e-26 seq8 127 2e-24 seq2 93.3 4e-14 >seq19 Length=3534686 Score = 152 bits (168), Expect = 4e-32 Identities = 696/1093 (64%), Gaps = 32/1093 (3%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 |||||| ||||||| | || | | || || || ||||||| || ||||||||||| Sbjct 2154488 GTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATGCCCGT 2154429 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACC--ACCGAGTAAGTGGGT 132995 ||||| ||| ||| |||| || || || || || | ||| ||| | || Sbjct 2154428 CTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCA--TAATTCGGC 2154371 Query 132996 TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCC 133055 ||||| || | || | ||| || ||| || ||||| | |||| ||||| ||| Sbjct 2154370 TCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGCC 2154311 Query 133056 ATGTTTATTATACACTTTGATTTGA-TCTCCCATGCCGTCTTGAAGAGATTCTTGACATG 133114 || || || | || ||| | | | ||||| |||||||| | | | || || Sbjct 2154310 ATTTTGAT-ACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATGTG 2154252 Query 133115 CTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAA 133174 ||| || ||||| || || ||||| | ||| || || | || | || ||||| || Sbjct 2154251 CTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTTCAT 2154192 Query 133175 TTCCGGAGTGT---AAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 ||| | || | | | | | ||| | || | | | | || || ||||| || Sbjct 2154191 TTC---ATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACGAC 2154135 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 || |||||||| | || || || | || || ||||| ||| |||| ||||| || Sbjct 2154134 CTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACGA 2154075 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 ||||||||||| | |||||||| || | || || ||||| |||| || | || Sbjct 2154074 CTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCGA 2154015 Query 133352 GTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTT 133411 ||| | ||||| | |||| || || || || | ||||| |||||| | | | Sbjct 2154014 GTTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGCTCGGT 2153955 Query 133412 GGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCAC 133471 || | ||| || || | ||| | |||| || ||| |||| || Sbjct 2153954 GGG------------GGTCTTGT--TCC-ACATGTCGTACTGCAGCATCCCCTTGCTGAC 2153910 Query 133472 CGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTC 133531 ||||||| || ||||| || || | || | | ||||||||| || || ||||| Sbjct 2153909 CGGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTC 2153850 Query 133532 CAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTG-GCATCGTCGC 133590 ||||||| | |||| |||||||| |||| | ||| | | ||| || || || | Sbjct 2153849 CAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCA-GCTTCTGCGCCTCTTCAC 2153791 Query 133591 TATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGA 133650 | ||||| | | | | |||| ||||| ||||||| ||||| | ||||| |||| Sbjct 2153790 TCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGA 2153731 Query 133651 TGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGA 133710 | || | || | ||| | || || || | | || |||| ||| | ||||| Sbjct 2153730 TCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGA 2153671 Query 133711 TGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAA 133770 |||| ||||| || ||||| || | | || | | | ||||| || | || Sbjct 2153670 TGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGT 2153611 Query 133771 ATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGG 133830 | || | | | || | || ||| || |||| | || || || ||||| || || | Sbjct 2153610 ACGTGTGGTC--CGGCTTC-ACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACCG 2153554 Query 133831 CCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGG 133890 | | || | || | | |||| |||||| || | ||| ||||| ||| ||||| | Sbjct 2153553 CTATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTG 2153494 Query 133891 TGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCC 133950 |||||| || | ||| ||||| | |||||| ||||||||| ||||||||||| Sbjct 2153493 TGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGA 2153434 Query 133951 CGCCGGTTTCGAC 133963 |||| || ||||| Sbjct 2153433 CGCCCGTCTCGAC 2153421 >seq1 Length=20238125 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || |||||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 19807252 ACCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGA 19807193 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||| | |||||| || ||| |||| ||||| || ||||| ||||| Sbjct 19807192 TAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGG 19807133 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || |||||||| ||| || || || || | |||| ||||||| |||||| Sbjct 19807132 AATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGAC 19807073 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 19807072 CTCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 >seq8 Length=9380469 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| || ||||| || ||||||||||| ||| || |||||| ||| Sbjct 4936185 CAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCATC 4936126 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 4936125 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTC 4936066 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| || |||| | ||||||||| | ||| | || Sbjct 4936065 CTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGT 4936006 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || |||||||| Sbjct 4936005 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq2 Length=16623535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||| || ||||| Sbjct 2043734 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 2043675 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| |||| | |||||||||||| || || || ||||||||||| Sbjct 2043674 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 2043619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823151100732