Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3 127 4e-24 >seq3 Length=13649947 Score = 127 bits (140), Expect = 4e-24 Identities = 216/304 (71%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | || |||||||||||| || || || ||||| |||| | || Sbjct 8055084 CTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCACGGTTTCCTGCGC 8055025 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGC-TTTGAGTTA 189567 ||||| ||||| ||||||||||| || ||||| | ||| || || || || | ||| | Sbjct 8055024 ATGTACTGGGCGAAGAAGATACTCGAGTGGACCAAAACTCCCGAGGAAGCGCTCGAG--A 8054967 Query 189568 TAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTA 189625 | |||||| | ||| || |||| || || || ||| || || ||||||||||| Sbjct 8054966 CGGCAATCTATCTCAACGACCGGTACAGCCTGGATGG-ACGCGACCCGAACGGATACGTC 8054908 Query 189626 GGTTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATT 189684 ||||| |||||||| || ||| | |||||| || || ||||| || ||| || || Sbjct 8054907 GGTTGCATGTGGTCGATCGCCGGCATTCACGATCAGGGC-TGGAAGGAGAGAGAAATCTT 8054849 Query 189685 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTATT 189744 || || |||||||| ||||| || || | | |||| || ||| | ||| || ||| Sbjct 8054848 CGGTAAAATAAGATACATGAACTACGAAGGATGTAAGCGAAAGTTTAACGTTAATGCATT 8054789 Query 189745 TATA 189748 | || Sbjct 8054788 TGTA 8054785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923180978714840