Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 seq7 100 3e-16 seq12 98.7 1e-15 seq2 98.7 1e-15 seq4 96.9 4e-15 >seq8 Length=9380469 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||| | || |||||| ||||| ||||| || | ||| || ||| | Sbjct 4936187 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCA 4936128 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 4936127 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 4936068 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||| || | || || || | || ||| Sbjct 4936067 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 4936008 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || ||||| ||||| || Sbjct 4936007 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4935970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2080027 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2080086 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 2080087 ATACTATCGAGGAT 2080100 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1911781 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1911722 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1911721 ATACTATCGAGGA 1911709 >seq7 Length=10083987 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 4556944 TATAAAAAACCATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 4557003 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 4557004 ATACTGACCACTATACTATCGAGGA 4557028 Score = 100 bits (110), Expect = 3e-16 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 60048 ACGTTTATGAAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105 || |||| ||||| || ||||| || | ||||||||||||| |||||||||||||||| Sbjct 4673703 ACATTTAAAAAAAACTTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA 4673644 Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||| |||||||||||| |||||| Sbjct 4673643 GGCGGGGATACTGACCACTATACTATCGAGGA 4673612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 3839581 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 3839522 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 3839521 TATACTATCGAGGA 3839508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 8115805 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 8115746 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 8115745 CACTATACTATCGAGGA 8115729 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4556619 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4556678 Query 60125 ATACTACCGAGGATTGAATAT 60145 |||||| |||||| | || || Sbjct 4556679 ATACTATCGAGGACTTAACAT 4556699 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4557288 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4557229 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4557228 ATACTATCGAGGA 4557216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 486188 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 486247 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 486248 CTATACTATCGAGGA 486262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 492899 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 492958 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 492959 CTATACTATCGAGGA 492973 >seq12 Length=8157176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||| |||||| ||||| || | ||||||||||||| |||||||||||||||||||| Sbjct 3866722 TTTAAAAAAAATCAGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 3866781 Query 60110 GACATACTCACCACTATACTACCGAGGATTG 60140 | ||||| |||||||||||| |||||| || Sbjct 3866782 GGGATACTTACCACTATACTATCGAGGACTG 3866812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 861024 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 860965 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 860964 TACTATCGAGGAT 860952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3866074 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3866133 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 3866134 TACTATCGAGGAT 3866146 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 3867245 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 3867304 Query 60123 CTATACTACCGAGGATTG 60140 |||||||| |||||| || Sbjct 3867305 CTATACTATCGAGGACTG 3867322 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 3867760 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 3867819 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 3867820 CTATACTATCGAGGAT 3867835 >seq2 Length=16623535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 6877408 AAAATTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 6877467 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 6877468 ACCACTATACTATCGAGGA 6877486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 8266853 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 8266794 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 8266793 CTATACTATCGAGGA 8266779 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || | |||||| || |||| || Sbjct 2043734 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 2043675 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||||||||||||||| || | |||||||| || | || | | |||||||||| | Sbjct 2043674 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 2043615 Query 43095 ATTTT 43099 || || Sbjct 2043614 ATCTT 2043610 >seq4 Length=12071184 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9633816 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 9633757 Query 60126 TACTACCGAGGATTGAATATATAA 60149 ||||| |||||| |||||||| Sbjct 9633756 TACTATCGAGGA---CATATATAA 9633736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807800475880