Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq8 127 1e-24 seq1 114 8e-21 seq7 86.0 4e-12 >seq8 Length=9380469 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||| || | || || ||||| ||||||||||||||| Sbjct 4936199 CCACCACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 4936140 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || |||| ||||||||| ||||| || || ||||||||||| || Sbjct 4936139 AGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGA 4936080 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 4936079 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4936020 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || ||||| ||||| || |||||||||||| Sbjct 4936019 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 4935972 >seq1 Length=20238125 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||||||| | ||| || ||||| || ||||||||||| Sbjct 19807251 CCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGAT 19807192 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||||||| ||||| ||||| || || || || || || || Sbjct 19807191 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 19807132 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | |||| || | || ||||| Sbjct 19807131 ATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACC 19807072 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||| || || ||||| ||||||||||| ||||||||| Sbjct 19807071 TCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATC 19807024 >seq7 Length=10083987 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/225 (70%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA--C 34229 |||| ||| |||||||| | || | | ||| || ||||| ||||| | ||| | Sbjct 5671022 AGCCGCAGGACCAGGTGCATCGTGGAGCCGTGCTGGATATTGTAATCGGAAA--TGATTC 5670965 Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC---ACGC 34286 | | || |||| |||||| || ||||| |||| |||||||||||| | || || | Sbjct 5670964 GCCCATCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGG-GTGCTATACCC 5670906 Query 34287 TCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTAT--CGAATCGGTCGATTCGACGTC 34344 |||| | || ||||||| | ||| | || || |||| || | |||| || Sbjct 5670905 TCTCGCTC----CTCAATTTTGCTCTTGATGTCCAATACCGTCTCGGACGCTACGACATC 5670850 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||| || || |||||||| | ||||||||||||||| ||||| Sbjct 5670849 CAGCGTAATCGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCAT 5670805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066601769760