Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8 105 5e-18 seq2 95.1 1e-14 seq1 91.5 1e-13 seq7 82.4 6e-11 >seq8 Length=9380469 Score = 105 bits (116), Expect = 5e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| ||| ||| | || ||||| || || |||||||| Sbjct 4936164 CTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAA 4936105 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 4936104 GATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 4936045 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||| ||| ||||| | |||||| ||||| ||||| || || || || Sbjct 4936044 CTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGAC 4935985 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 4935984 GAAGATCTGCATCTTG 4935969 >seq2 Length=16623535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| ||| || |||| ||| Sbjct 2043734 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 2043675 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| ||||| ||||| || || || || | ||||||||||||| Sbjct 2043674 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 2043618 >seq1 Length=20238125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 45107 TCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG 45166 || ||||| | | || || |||| ||| ||||| |||||||||||| ||||||||| Sbjct 19807254 TCACCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCG 19807195 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || ||| | || |||| ||||| |||||||| |||| || ||||| || ||| Sbjct 19807194 GATAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGA 19807135 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | |||||||| || || || ||| || | | | ||||| ||| Sbjct 19807134 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCG 19807075 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| | || || ||||| || || || || |||||||| || ||||| || Sbjct 19807074 ACCTCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATCTT 19807022 >seq7 Length=10083987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || ||||| ||||| || | ||||| |||||||| | | |||||| Sbjct 5670959 TCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCTATACCCTCTCGC 5670900 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC-ACCTCCACGGTAAT 45300 ||| ||||||| ||| | || || | || || || | || |||| ||||| Sbjct 5670899 TCCTCAATTTTGCTCTTGATGTCCAATACCGTCTCGG-ACGCTACGACATCCAGCGTAAT 5670841 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||||| |||| ||| ||||||||||||||||| || Sbjct 5670840 CGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCATTTT 5670802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395068598663791