Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq19 921 0.0 seq10 194 1e-44 seq8 100 3e-16 >seq19 Length=3534686 Score = 921 bits (1020), Expect = 0.0 Identities = 1368/1937 (71%), Gaps = 23/1937 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || |||||||| || ||||| | ||||| |||||||| || || ||||||||| Sbjct 2154490 TTGTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATGCCC 2154431 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 |||||||| ||||||||||| |||| ||||| |||||||||| || |||||| ||||| Sbjct 2154430 GTCTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCATAATTCGGC 2154371 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | ||| || | ||||||||||| ||| || || ||||| || |||||||| ||| Sbjct 2154370 TCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGCC 2154311 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || | || || ||| |||||||| || |||||||||| | | ||| | Sbjct 2154310 ATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATGTGC 2154251 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGT---ATGATCAAATTTTTA 22402 ||| || |||||| |||||| ||| || |||||| | ||| ||||| Sbjct 2154250 TGCGGAATTTCCTCGATCTTCTGGATGGAACC---ATTGTGCGCGAGGATGTTGTTTTTC 2154194 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || ||||| ||||| || | | |||| || | | || |||| | || || || Sbjct 2154193 ATTTCATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACGACC 2154134 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || |||||||| |||| || || || | ||| | ||| || ||| |||| ||||| || Sbjct 2154133 TGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACGAC 2154074 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| |||| ||||| ||||| ||||||||||||||||| |||||||| |||||| Sbjct 2154073 TCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCGAG 2154014 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | | ||| ||||| | ||| || ||| |||| ||||| |||||| |||| Sbjct 2154013 TTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGCTCGGTG 2153954 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || ||| |||| |||||| ||||| |||| || || || |||| ||||| ||| Sbjct 2153953 GGGGTC---TTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACTGCCCTCG 2153897 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 ||||| ||||||| |||| ||||| || || || || |||||||| |||||||| Sbjct 2153896 TACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAG 2153837 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAA-TTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || || |||||||||| | ||||| ||| ||| | | | || |||||||| Sbjct 2153836 TAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCT-CTTCACTCTCGTACGGGTA 2153778 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 ||||||| | |||||| || ||||| ||||| ||||| ||||||||||| | || Sbjct 2153777 GCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGCG 2153718 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || || || || || || |||| || || | || ||||| || |||||| Sbjct 2153717 CATGTTGGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTTCAG 2153658 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG----CCCG 22997 ||| | || ||| | || | | |||| ||||| | || | Sbjct 2153657 GTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGTACGTGTGGTCCGG 2153598 Query 22998 ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 || || ||| |||| | ||||| || || |||||||| || || | || || | Sbjct 2153597 CTTC----ACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACCGCTATTTCATCCT 2153542 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 |||||| |||||| || ||||| || || || || ||||| || ||||||| || Sbjct 2153541 TGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCT 2153482 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||||| || |||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 2153481 GTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGACGCCCGTCTCGA 2153422 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGC 23237 ||||||| |||||||| || ||||| | |||||| | || | || | ||| || Sbjct 2153421 CCTGCGATTCGATGATGGCAAACCACAGATCCTGAGCCTTGACCTGACGGATAAACCGGC 2153362 Query 23238 CTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGC 23297 | || | |||||| | ||| | | ||||| || | || | | || | ||| | Sbjct 2153361 CCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTC 2153302 Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 |||| | | ||| ||||| | |||||||| || || ||||| ||| | Sbjct 2153301 CGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTCGCCTCGACGCGCTGCATGA 2153242 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | |||||||| | ||| || |||||||||| ||||| ||||| |||||||| ||||||| Sbjct 2153241 ACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGG 2153182 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 ||||||| |||| ||| | ||| || ||||| || | ||||||||||||||||| | | Sbjct 2153181 TGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCG 2153122 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 | ||||| || || | ||| ||||||||||| ||||| || || || ||||||||||| | Sbjct 2153121 CGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGA 2153062 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597 | | ||||||||||| || |||||||| ||| ||| || | || || | Sbjct 2153061 CGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCT 2153002 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | || || | | ||| || | || || ||||||||| |||| ||||| |||| ||||| Sbjct 2153001 TCGCACGGATGCAGTGGACATTCAAGCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGC 2152942 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | || |||| |||||||| ||||||||||||||||| || ||| | || || | Sbjct 2152941 ACTGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGC 2152882 Query 23718 ACGAAGACATTTGCG--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 | ||||| | |||| | || | || || |||| |||| ||| || || ||||| Sbjct 2152881 AGGAAGAAAGCTGCGGACGTT--GTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGT 2152824 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 |||||| | | ||| | |||||| || || || ||||| ||||| || ||||| ||||| Sbjct 2152823 AAAGTAACGCTCCGAGAGTAGATTATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTG 2152764 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || |||||||| |||||||||| ||| | || |||| ||| || | ||| || || Sbjct 2152763 AATGCCGATGGCTACGCGCATCAGCATATGCTGCGGTCGCTCAACGATCTTGCCCTTGAT 2152704 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 || | ||| || || |||| || |||||| || |||||||| | ||| || || || Sbjct 2152703 CTTCAGCAGGTACGACCGTTCCAGCGTTTTGAAGCCAAAATAATTGTAGCCGAAATCGCG 2152644 Query 23956 ATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAA 24015 ||| | | ||||| || |||| |||| || || | |||||| |||||||||| Sbjct 2152643 ATCATATATGATGGCAGAGTTCAGGCGGTCGGCGTTATCCATGATGATTTTGTAATGAAT 2152584 Query 24016 ATTCGATATCATCGGCG 24032 |||||| | ||| |||| Sbjct 2152583 ATTCGAAAGCATAGGCG 2152567 >seq10 Length=7496699 Score = 194 bits (214), Expect = 1e-44 Identities = 291/411 (71%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAA 57937 || ||||| || ||||||||| |||| ||| | |||||||| || ||| | | || Sbjct 495769 CTATTCAATGCCATCGAAACACTGCCGTGCG-TGAAGAAGAAGGCCGACTGGGCGCTGAA 495711 Query 57938 ATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 ||||| ||| | ||||| || | |||| || | | ||||| ||||||||||| Sbjct 495710 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGA 495651 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 || || |||||| || ||||| || || || || ||| ||||||| || |||||||| Sbjct 495650 GGGCATCTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGAT 495591 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || |||| || |||||| |||| |||||||||||||| || || || || Sbjct 495590 GCCGGGTTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACTT 495531 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACAT 58177 ||| || || |||| | || | || | || |||||||| || || | ||| Sbjct 495530 TGCCTGTCTGATGTTCAAGTACCTGGTGCAGAAGCCGACGCGCGAACGTGTGACCAGCAT 495471 Query 58178 TATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCAT 58237 ||| ||| ||||| |||||| | ||||| |||| | || || ||||| | || Sbjct 495470 CATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTCACGAAGGCGCTCCCGGTCGATAT 495411 Query 58238 GCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 ||||||||||||| |||| ||||||| ||||||| ||||| || ||||| Sbjct 495410 GCTCGGTATGAACTGTGATCTGATGTCGCAGTACATCGAGTTCGTCGCCGA 495360 Score = 168 bits (186), Expect = 6e-37 Identities = 195/263 (74%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||||||||| |||||||| || || || |||||||| ||||| ||| |||| Sbjct 496142 AGGCCGAAGCATCGTTCTGGACCGTGGAGGAGGTCGACCTGTCGAAGGACATGAAAGATT 496083 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| | || || |||| | |||| || |||||| | || |||||||||| Sbjct 496082 GGGAGGCGCTGAAGCCGAGTGAGCGTCATTTCATCTCGCACGTGCTCGCATTTTTCGCCG 496023 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | || || || || |||||||||||| |||||||| | || || || ||||| || | Sbjct 496022 CGTCGGACGGCATCGTTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTAA 495963 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | || ||| | ||||| |||||||| || | || || |||||||| || || |||| Sbjct 495962 CCGAAGCGCGCTGCTTCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGATGT 495903 Query 57829 ATTCGCTACTCATCGATACGTAC 57851 ||||||| || ||||| |||||| Sbjct 495902 ATTCGCTCCTGATCGACACGTAC 495880 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 58322 TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAA 58381 ||||||||| ||||||||||| | || ||| | | ||||||||||||||||| || || Sbjct 495250 TTACAACACCAAAAATCCGTTCAACTTCATGGAGTTTATCTCGCTCGAGGGCAAAACGAA 495191 Query 58382 CTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||| ||||| || || || |||| ||||| || | ||||||||| Sbjct 495190 CTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGTGGGGCGTGATG 495145 >seq8 Length=9380469 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 4935970 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4936029 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| ||| | ||||| ||| Sbjct 4936030 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 4936089 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || ||| || Sbjct 4936090 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTAC 4936149 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || ||||| || |||||||| || Sbjct 4936150 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCT 4936184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758760678320