Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19 230 3e-55 seq10 127 3e-24 >seq19 Length=3534686 Score = 230 bits (254), Expect = 3e-55 Identities = 794/1225 (65%), Gaps = 25/1225 (2%) Strand=Plus/Minus Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 || || | |||||| ||||| || || ||||| || |||||||| ||||| | | || Sbjct 2153869 GCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTC 2153810 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 || | || || || || || | || || | ||||| ||||| || || | Sbjct 2153809 AGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATG 2153750 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 || || || || |||||||| || || || | | | || ||| | ||||| || | Sbjct 2153749 CCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACC 2153690 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 62891 || || || ||||| || || ||||| || || || | ||||| | ||| | || Sbjct 2153689 GGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTC---TTGGCGACT 2153633 Query 62892 TCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAAC 62947 ||||||||||| |||||| | | | || || | || |||||||||| || | Sbjct 2153632 TCCTTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCT-TCACGAACATGTTCAGCGCGAT 2153574 Query 62948 AGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTG 63005 ||||||||||| || || |||| |||| | | | || || | | || || ||| Sbjct 2153573 TGATGCCAGATTGCAGACCGCTATTTCATCCTTGGA--CGAGTACTCGACGATTTCCGTG 2153516 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63065 || || || |||||||| || || | || ||||| || ||||| || |||||| Sbjct 2153515 CACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCA 2153456 Query 63066 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63125 ||||| || || ||| | || || || || | ||| ||||| || || || ||| Sbjct 2153455 TCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCAC 2153396 Query 63126 ACGACTCGAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACA 63183 | | ||||||| | | | || | | | | || | ||||| || || | Sbjct 2153395 AGATCCTGAGCCTTGACCTGACGGA--TAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGA 2153338 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 ||| ||||| |||||||| || || || ||||| || | ||| ||||||| Sbjct 2153337 GCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCA 2153278 Query 63244 ACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | |||| ||| ||| ||| || || | ||| || ||||| || | ||| || || Sbjct 2153277 AGCTCCACATCT-CGTTCGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCG 2153219 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 || | || | | | ||||| || || || ||||| || |||||||| ||| Sbjct 2153218 TAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAAC 2153159 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | | ||| |||||||| || | ||| || || | | || || || ||||| Sbjct 2153158 TCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTG 2153099 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || ||||| || | || | |||||||| || || || | || ||| || | | ||| Sbjct 2153098 CCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCG 2153039 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTG 63540 || || || || || || || | ||| || ||| | ||||| || | | ||| Sbjct 2153038 TTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTC 2152979 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | || || || || || ||| || || || | ||||| | || |||||||| || | Sbjct 2152978 A-AG-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAA 2152921 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 |||| || ||||| || || ||| | || ||||| ||| ||| | || |||| Sbjct 2152920 TGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTT 2152861 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 || | || ||| || ||||| || || |||||||| | || || ||||||| Sbjct 2152860 GTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGAT 2152801 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 | || ||||| || || | || |||||| ||||| || | || || ||||| | Sbjct 2152800 TATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCA 2152741 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||| ||||| |||| ||||| || ||| || || |||| || ||| || ||||| Sbjct 2152740 GCATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGTTCCA 2152681 Query 63841 AAGTTTTAAAACCAAAATAGTTGTA 63865 ||||| || |||||||| ||||| Sbjct 2152680 GCGTTTTGAAGCCAAAATAATTGTA 2152656 >seq10 Length=7496699 Score = 127 bits (140), Expect = 3e-24 Identities = 185/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| ||| || || ||||||||||| |||||||| | ||| | ||||| Sbjct 495513 TTGAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTC 495572 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || || | || ||||| ||||| ||||| || ||||| || |||| ||||| Sbjct 495573 GAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTC 495632 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| ||||||||| || || || || ||||| |||| | | ||| ||| | ||| Sbjct 495633 CCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGC- 495691 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| ||||||||||| || || || |||| | Sbjct 495692 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTG 495750 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 495751 TTTCGATGGCATTGAATAG 495769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806806500880