Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq19 250 3e-61 seq10 107 3e-18 >seq19 Length=3534686 Score = 250 bits (276), Expect = 3e-61 Identities = 820/1261 (65%), Gaps = 25/1261 (2%) Strand=Plus/Minus Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || || |||||||| ||||| || || ||||| || |||||||||||||| | | || Sbjct 2153869 GCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTC 2153810 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 || | || || || || || | || || | ||||| ||||| || || | Sbjct 2153809 AGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATG 2153750 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 || || || || |||||||| || || || | | | || ||| | ||||| || | Sbjct 2153749 CCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACC 2153690 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 65684 || || || ||||| || || ||||| || || || | ||||| | ||| | || Sbjct 2153689 GGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTC---TTGGCGACT 2153633 Query 65685 TCCTTCAGTTTGAGAAAATCAAA----TCGCTCATCTATTACAAACATGTTCAATGCAAC 65740 ||||||||||| |||||| | | | | || | || |||||||||| || | Sbjct 2153632 TCCTTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCT-TCACGAACATGTTCAGCGCGAT 2153574 Query 65741 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTG 65798 ||||||||||| || || |||| |||| | | | || || | | || || ||| Sbjct 2153573 TGATGCCAGATTGCAGACCGCTATTTCATCCTTGGA--CGAGTACTCGACGATTTCCGTG 2153516 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || || || |||||||| || || | || ||||| || ||||| || |||||| Sbjct 2153515 CACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCA 2153456 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 ||||| || || ||| | || || || || | ||| ||||| || || || ||| Sbjct 2153455 TCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCAC 2153396 Query 65919 ACGACTCGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA 65976 | | ||||||| | | | ||| | | || | ||||| ||| || | Sbjct 2153395 AGATCCTGAGCCTTGACCTGACGGATAA--ACCGGCCCTCCTTCTCGTAGCCTGTGTAGA 2153338 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 ||| ||||| |||||||| || || ||| ||||| || | ||| ||||||| Sbjct 2153337 GCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCA 2153278 Query 66037 ACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 66095 | |||| |||| || ||| || || | ||| || ||||| || | ||| || || Sbjct 2153277 AGCTCCACATCTCGTTCG-CCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCG 2153219 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 || | || | | | ||||| || || || ||||| || |||||||| ||| Sbjct 2153218 TAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAAC 2153159 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | | ||| |||||||| || | ||| || || | | || || || ||||| Sbjct 2153158 TCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTG 2153099 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | || | |||||||| || || || | || ||| || | | || Sbjct 2153098 CCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCG 2153039 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTG 66333 ||||| | || || || || | ||| || |||| | ||||| || | | ||| Sbjct 2153038 TTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTC 2152979 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 | || || || || || ||| || || || | ||||| | || ||||| || || | Sbjct 2152978 A-AG-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAA 2152921 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 ||||||| || || || ||| ||| | || ||||| ||| ||| | || |||| Sbjct 2152920 TGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTT 2152861 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 || | || ||| || ||||| || || |||||||| | || || ||||||| Sbjct 2152860 GTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGAT 2152801 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 | || ||||| || || | || |||||| ||||| || | || || ||||| | Sbjct 2152800 TATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCA 2152741 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||| ||||| |||| |||||||||||| || || |||| || ||| || ||||| Sbjct 2152740 GCATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGTTCCA 2152681 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 66693 ||||| || |||||||| ||||| || || || || || || || | ||||| | Sbjct 2152680 GCGTTTTGAAGCCAAAATAATTGTAGCCGAAATCGCGATCATATATGATGGCAGAGTTCA 2152621 Query 66694 G 66694 | Sbjct 2152620 G 2152620 >seq10 Length=7496699 Score = 107 bits (118), Expect = 3e-18 Identities = 183/260 (70%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 || ||||||| ||| || || |||||||| || |||||||| | ||| | ||||| Sbjct 495513 TTGAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTC 495572 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || || || | || ||||| ||||| ||||| || ||||| || |||| || || | | Sbjct 495573 GAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAA-GCT 495631 Query 36266 CCAGA-AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 || | |||||| || || || || || ||||| |||| | | ||| ||| | ||| Sbjct 495632 CCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGC 495691 Query 36325 ACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 || || || ||||| || | ||||| ||||||||||| || || || |||| | Sbjct 495692 -CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGT 495749 Query 36380 GTCTCTATAGCATTAAAGAG 36399 || || || ||||| || || Sbjct 495750 GTTTCGATGGCATTGAATAG 495769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161520563640