Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 232 9e-56 seq10 113 6e-20 >seq19 Length=3534686 Score = 232 bits (256), Expect = 9e-56 Identities = 793/1225 (65%), Gaps = 21/1225 (2%) Strand=Plus/Minus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || |||||||| ||||| || || || || || ||||||||||| || | | | Sbjct 2153871 CGGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGT 2153812 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || | || || || || || | || || | ||||| ||||| || || | Sbjct 2153811 TCAGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCA 2153752 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| |||||||| || ||||| | | | || || | ||||| || | Sbjct 2153751 TGCCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCA 2153692 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCA 71644 || || || ||||| || || ||||| || || || | |||| | ||| | | Sbjct 2153691 CCGGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTC---TTGGCGA 2153635 Query 71645 CATCCTTTAGTTTGAGAAAATCAAATCTC----CCATCTATTACAAACACGTTCAAGGCA 71700 | ||||| ||||| |||||| | | || || | || |||| ||||| || Sbjct 2153634 CTTCCTTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCT-TCACGAACATGTTCAGCGCG 2153576 Query 71701 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA--TATTGTATAATTTCAG 71758 | ||||||||||| || || |||| |||| | | | | || | | ||||| | Sbjct 2153575 ATTGATGCCAGATTGCAGACCGCTATTTCATC--CTTGGACGAGTACTCGACGATTTCCG 2153518 Query 71759 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 71818 |||| || || |||||||| || || | || ||||| || ||||| || |||| Sbjct 2153517 TGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACG 2153458 Query 71819 CATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 71878 ||||||| || || || |||| || || || | ||| ||||| || || || || Sbjct 2153457 CATCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACC 2153398 Query 71879 AGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 71938 | | | ||||||| | | | | | || | ||||| ||| || | Sbjct 2153397 ACAGATCCTGAGCCTTGACCTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGA 2153338 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 ||| ||||| |||||||| | || | ||| ||||| || | ||| ||||||| Sbjct 2153337 GCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCA 2153278 Query 71999 ATGACCAC-TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 | |||| |||| || | | || || | ||| || ||||| || | ||| || || Sbjct 2153277 AGCTCCACATCTCGTTCGCC-TCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCG 2153219 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 || | || | | | |||||| || || || ||||| || |||||||| ||| Sbjct 2153218 TAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAAC 2153159 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| |||||||| || | ||| || || | | || || || ||||| Sbjct 2153158 TCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTG 2153099 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | || | |||||||| || || || | || ||| || | | || Sbjct 2153098 CCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCG 2153039 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTG 72295 ||||| || || || || | ||| || |||| | ||||| || | || ||| Sbjct 2153038 TTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTC 2152979 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | || || || || || ||| || || || | ||||| | || ||||| || || | Sbjct 2152978 A-AG-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAA 2152921 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 ||||||| || || || ||| ||| | || ||||| ||| ||| | || |||| Sbjct 2152920 TGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTT 2152861 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || | || ||| || ||||| || || |||||||| | || || ||||||| Sbjct 2152860 GTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGAT 2152801 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 | || ||||| || || | || |||||| || || || | || || ||||| | Sbjct 2152800 TATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCA 2152741 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| |||| |||||||||||| || || |||| || ||| || ||||| Sbjct 2152740 GCATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGTTCCA 2152681 Query 72596 AAGTTTTAAAACCAAAATAGTTGTA 72620 ||||| || |||||||| ||||| Sbjct 2152680 GCGTTTTGAAGCCAAAATAATTGTA 2152656 >seq10 Length=7496699 Score = 113 bits (124), Expect = 6e-20 Identities = 184/260 (71%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| ||| || || ||||||||||| ||||| || | ||| | ||||| Sbjct 495513 TTGAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTC 495572 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || || | || ||||| ||||| ||||| || ||||| || || | || || | | Sbjct 495573 GAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAA-GCT 495631 Query 42173 CCAG-AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 || | ||||||||| || || || || ||||| |||| | | ||| ||| | ||| Sbjct 495632 CCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGC 495691 Query 42232 ACTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 || || || ||||| || | ||||| ||||||||||| || || || |||| Sbjct 495692 -CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGT 495749 Query 42287 GTTTCTATGGCATTAAAGAG 42306 ||||| |||||||| || || Sbjct 495750 GTTTCGATGGCATTGAATAG 495769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127698351960