Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19 237 2e-57 seq2 214 3e-50 seq17 196 7e-45 seq10 145 1e-29 seq28 96.9 5e-15 >seq19 Length=3534686 Score = 237 bits (262), Expect = 2e-57 Identities = 647/973 (66%), Gaps = 36/973 (4%) Strand=Plus/Plus Query 96400 TGGACTCGGCCATTGTAGACGATCGCGATTTTCAATCTTTGACCTATTTTGCATACAAGA 96459 || |||| ||||| || | ||||||||||| | | ||||||| | ||| | Sbjct 2152621 TGAACTCTGCCATCATATATGATCGCGATTTCGGCTAC---AATTATTTTGGCTTCAAAA 2152677 Query 96460 CGCTAGAGCGTACCTATCTGATAAAGCTGGCCGACGGTAAGATTTGTGAACGAGTGCAGC 96519 |||| || || | || ||| | ||| | | | || ||||| ||| ||| ||||| Sbjct 2152678 CGCTGGAACGGTCGTACCTGCTGAAGAT---CAAGGGCAAGATCGTTGAGCGACCGCAGC 2152734 Query 96520 ACATGTACATGAGGACCGCGCTCGGTATTCACGGTCGGGATATTGAATCGGTAATCGAAA 96579 | ||| ||| | || |||| |||||||| |||||| || ||| || || | Sbjct 2152735 ATATGCTGATGCGCGTAGCCATCGGCATTCACGGCGAGGATATCGATGCGGCCATAGAGA 2152794 Query 96580 CGTACAATCTACTCTCGAACCGCTACTATGTACATTCGACGCCTACTCTGTGTCATGCGG 96639 | || |||||||||||| | || |||| | ||| || ||||||| ||| | || | Sbjct 2152795 CCTATAATCTACTCTCGGAGCGTTACTTTACGCATGCGTCGCCTACATTGTTTGCGGCTG 2152854 Query 96640 CAACGAATCGTTC-CAACTATGCCTCTTGCTATCTGCT--CGAACTCAAAGAGGACAGCA 96696 | || | ||| | || || | | || |||| |||||| ||| || || ||||||| Sbjct 2152855 CGACACAACGTCCGCAGCTTT-CTTCCTGCTTTCTGCTGACGATGTCG--GACGACAGCA 2152911 Query 96697 TCGGTGGCGTTATGGACACGCTAAAGGACGCGGCCACCATTTCAAAACACTGTGGCGGTG 96756 ||| ||| || |||||| | ||| | || ||||| || || || Sbjct 2152912 TCGAGGGCATTTACGACACGTTGAAGCAGTGCGCGCTGATTTCGAAGTCGGCCGGAGGCA 2152971 Query 96757 TAGGTTTGCATGTGCACAAGTTGCGCTGTAAA---AACTCTACGATTCATTCAACAAACG 96813 | || ||| |||| ||| | || || || ||| ||| || || | |||| Sbjct 2152972 TTGGCTTGAATGTCCACTGCATCCG-TGCGAAGGGAACG-TACATCGCAGGCA-CGAACG 2153028 Query 96814 GCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTA 96873 | | ||| || || ||||| ||||| | | ||||| | | || || || Sbjct 2153029 GAATTTCCAACGGGCTGGTGCCGATGCTGCGCGTCTACAACAACACCGCGCGCTATGTCG 2153088 Query 96874 CACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGG 96933 ||||||||||| || || || || || | || ||||| | || || ||||||| | Sbjct 2153089 ACCAGGGCGGCAACAAGCGCCCCGGTGCGTTCGCGATCTACCTCGAGCCGTGGCACGGCG 2153148 Query 96934 ACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGG 96993 | || || || ||| |||| || || ||| | ||| || |||| || || | | Sbjct 2153149 ATGTGTTCGAGTTTCTCGATCTGAAGAAGAACACCGGCAAGGAGGAGGTCCGCGCGCGCG 2153208 Query 96994 ACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCT 97053 || |||| || || ||||||||||| ||| |||||||| |||||||| | | || | Sbjct 2153209 ACATGTTCTACGCCCTCTGGGTGCCGGATCTGTTCATGCAGCGCGTCGAGG-CGAACGAG 2153267 Query 97054 AC-TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||||| | |||||||| || | ||||| ||||| |||| ||||| || ||| Sbjct 2153268 ATGTGGAGCTTGATGTGCCCGCACGATTGTCCCGGACTGTCGGATTCGTGGGGAGAGGAG 2153327 Query 97113 TTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCG----ATACGTGAGACGAGT 97165 ||||| ||| ||||| | ||||||| | |||||||| || ||| || || Sbjct 2153328 TTTGAA---AAGCTCTACACAGGCTACGAGAAGGAGGGCCGGTTTATCCGTCAG----GT 2153380 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | | || | || |||||| |||||| | | ||||| ||||| || ||||| Sbjct 2153381 CAAGGCTCAGGATCTGTGGTTTGCCATCATCGAATCGCAGGTCGAGACGGGCGTCCCGTA 2153440 Query 97226 CATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| || ||||||||| | ||| |||||||| |||||||||| || ||||||| |||| Sbjct 2153441 CATGCTGTACAAGGATGC-GTGCAATCGCAAGAGCAACCAACAGAACGTGGGCACAATCA 2153499 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 || |||| || |||||||||||||| || |||||| | || ||| || | || || | Sbjct 2153500 AGTGCTCAAACCTGTGCACGGAAATCGTCGAGTACTCGTCCAAGGATGAAATAGCGGTCT 2153559 Query 97345 GCGTTCTGGCATC 97357 || ||||||||| Sbjct 2153560 GCAATCTGGCATC 2153572 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || ||||| ||| || || ||| ||| | ||||| ||||| | || Sbjct 2154267 TACAAGACGGTTTGGGAAATTTCGGTGAAAACGTGTATCAAAATGGCGGCCGATCGTGGG 2154326 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | |||||||||| || |||||||| | |||| |||||||| | || || Sbjct 2154327 GCGTTCATTGACCAGTCGCAGTCGTTCAACATTCACGTGGCCGAGCCGAATTATGGTAAG 2154386 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| ||||| || || |||| ||||| | |||||| ||||||||||||||||| ||| Sbjct 2154387 CTGACGTCGATTCATTTCTACGGCTGGAAGATGGGCCTGAAGACGGGCATGTACTACCTG 2154446 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | || ||| |||| || || || | |||||||| ||| Sbjct 2154447 CGCACCAAGCCGGCAGTGAACGCGATCCAGTTTACGGTCGAC 2154488 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134242 TCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTCGTCATCGGAATGG 134301 || ||||| | || ||||| || || || ||| |||| | || || || |||||| Sbjct 3008431 TCGCAAATGAACTGAGCGATACGGTCGCCTTTTTTCACTTCGAAATCTAGCTCAGAATGG 3008490 Query 134302 TTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGACG 134361 || || ||||| ||||| | |||||| ||||| ||| ||||||||||| ||||| Sbjct 3008491 TTGAACAGGACGACTCCGACGTTTCCCCGGTAGTCCTCGTCGACGACACCGGCGCCGACA 3008550 Query 134362 TCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTTCC 134421 ||||| | ||| | |||| ||| || ||||| | || || ||||||||||| Sbjct 3008551 TCGATGAAATTTTTGACGGCCAAACCGGAACGAGGAGCTACCCGGCCATAGCAACCTTCT 3008610 Query 134422 GG 134423 || Sbjct 3008611 GG 3008612 >seq2 Length=16623535 Score = 214 bits (236), Expect = 3e-50 Identities = 398/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || ||| | ||||| || ||||||||||| |||||| |||| ||||| | | Sbjct 6701802 TTTCCGTTGAACCTTCGATGTTCCTGTACATGATGGCATTCATGCTGACCTCGGTCGTTG 6701743 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 |||||||||||| | | ||| |||||||||| || ||||||| ||||||| ||| | | Sbjct 6701742 AGCAGGCGTTTTTCCTCTACAAAGCGTGCACGGTGGACCATGGGTACTCGCACGAGATTT 6701683 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 | | || || |||||| | |||||||| || || ||| ||| || || | Sbjct 6701682 GTCTTAATATCGAGCAGTACCAGGACATCAAGAAGGAGGTACAGGTGACAACCTCCACCT 6701623 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 |||||||||||||| | |||| | ||||| || | | |||| |||| |||| Sbjct 6701622 TTCATCAGTGGAACAACATCGCCATGTACGTGGTACCGATCGTGCTGGCGCTTTTTCTAG 6701563 Query 50034 GATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAAC 50093 | ||| || |||||||| | ||| || ||| | || ||| || ||| Sbjct 6701562 GTGCCTGGTCGGACCGGCGCGGTCGCAAGCTTCCACTGATCCTCGGGCTCTGCGGAAAAT 6701503 Query 50094 TCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTATA 50150 | | | |||| ||| || ||| |||| | || | | |||||||| ||||| | Sbjct 6701502 TGGTCTACTCGCTGATGATAGTCGTGAACACGCGCATGCCCTCTTGGCCCGTCGAGTACA 6701443 Query 50151 TAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAG 50210 | |||||||| || | | ||||| | || ||||| ||||| | |||| ||||| Sbjct 6701442 TCATCTACACTGCGACGATCCCGAGCGTGCTGACCGGGGCCGACATTGCCATTTTCGCTT 6701383 Query 50211 CGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCA 50270 | |||||||| ||||| |||| | |||| |||||| | || |||||||| | || Sbjct 6701382 CCTGCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGAACGCTACGCATCACCA 6701323 Query 50271 TCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGT 50330 || | || || |||||| ||||||||||| | ||| || || |||||| ||| | | Sbjct 6701322 TCCTCGACGCAACCTACCTCAGCACGATGCCGATCGGAGTCGCCCTCGGTAACGTGATCT 6701263 Query 50331 GGAAGCGATTCCG---ATCCTACCCCATCATGTTTGCAATCAA 50370 || || | ||| ||| | |||||||| || ||||| Sbjct 6701262 TCAACCGCACGGGGAAATCGTACACGATCATGTTCGCCATCAA 6701220 >seq17 Length=4025992 Score = 196 bits (216), Expect = 7e-45 Identities = 388/571 (68%), Gaps = 14/571 (2%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||||||| |||||||||| || ||||| ||||| | || |||||||||||||| ||| | Sbjct 95041 TTTGCGGAAAAAGATGACACCAGCTCGCGGACCGCGCAGCGTCTTGTGCGTTGTGGTGCT 95100 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 || | || ||||||||| || || || || | | || | | |||| || Sbjct 95101 GACCACATCGGCATACTCAAAAGGCGACGGTATCACACCGGCGGCCACTAGCCCCGATAT 95160 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 || || |||||||| | ||| ||| || | || || || ||||||||||| | Sbjct 95161 ATGCGCCATATCGGCGAACAGGTAGGCCCCATTTTGATTAGCTATTTCTCGGAATCGCTT 95220 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 |||||| |||| || | ||||||| ||||||| || || | | | || || || || Sbjct 95221 ATAGTCTAAGCAGCGCGAATAGCAAGATATGCCGGCGATAATCACCTTCGGCTTAAACAG 95280 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 || || | || | | || | ||||||| |||||||| |||||| || ||||| Sbjct 95281 CTTTGCTGTTTCCTCCATCTTCTCGTAGTCGATCAGTCCAGTAACAGGATCTACTTTGTA 95340 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448 |||||||||||||| || | || || || || | ||| |||| ||| || Sbjct 95341 TGGCATGCTTTCGAAGAAAATCGACGTGGCAGAAATTTTCTTCGTCTGCGTCATGAACCC 95400 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 ||| ||||| || || || || ||||| || || |||||||| | |||||| || | | Sbjct 95401 GTGGGTCAGATGACCACCATCCGGCAGGTCCAGCCCCATGATACGACCGTGTGGCTCGAT 95460 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCC 127568 | ||||||| || || ||||||||| ||||| || || || || || ||| Sbjct 95461 CAGAGCAGTGTAGACCGCGAAGTTGGCCGGAGAGCCGGAATATGGCTGCACGTTGCATCC 95520 Query 127569 CCATTCGGACTCGTTCAAATTGA-ACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 ||||| | | |||| || | || || ||||| |||||| | |||||| | Sbjct 95521 CCATT-GTTCCGAATCAAGGCGATAAGCCTCAAGTGCTCGCTTCTGTGCCAACAGTTCAA 95579 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTA 127658 | ||| ||||||||||| || || ||||| Sbjct 95580 TTTCATCAATAAACTCGTTGCCTCCGTAGTA 95610 >seq10 Length=7496699 Score = 145 bits (160), Expect = 1e-29 Identities = 240/341 (70%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || |||||||| ||||||||||||||| || || || || ||||| || | Sbjct 495672 TGGTTGCGTTTGCCGCCGTCGAGGGCATCTTCTTTAGCGGGAGCTTCGCCGCCATTTTCT 495613 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| |||||||| || || ||||| || |||| | |||||| | || || || | Sbjct 495612 GGCTGAAGAAGCGGGGCCTGATGCCGGGTTTGACCTTCTCGAACGAGCTGATTTCGCGCG 495553 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 |||||||||| ||||| ||||||||| ||| |||| ||| || ||| || | || Sbjct 495552 ACGAGGGCCTGCACTGCGACTTTGCCTGTCTGATGTT---CAAGTACCTG-GTGCAGA-A 495498 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 || || ||| ||| || | || ||| | |||||| ||| ||| || || | Sbjct 495497 GCCGA---CGCG-CGAACGTGTGACCAGCATCATCCGCGATGCGGTGCTGATCGAGCAGG 495442 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || | | || |||||| ||| | || |||||||| | || |||| Sbjct 495441 AGTTCCTCACGAAGGCGCTCCCGGTCGATATGCTCGGTATGAACTGTGATCTGATGTCGC 495382 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||| || || ||||| || ||| |||||| Sbjct 495381 AGTACATCGAGTTCGTCGCCGATCGGCTGCTGGTGGAGTTG 495341 Score = 109 bits (120), Expect = 8e-19 Identities = 189/274 (69%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||| || || |||||||| ||||| |||||| || | |||| Sbjct 496142 AGGCCGAAGCATCGTTCTGGACCGTGGAGGAGGTCGACCTGTCGAAGGACATGAAAGATT 496083 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||||| | | ||| | |||||| | || || |||||| | | || || || | Sbjct 496082 GGGAGGCGC---TGAAGCCGAGTGAGCGTCATTTCATCTCGCACGTGCTCGCATTTTTCG 496026 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| || || || ||||| ||||| |||||| | ||| ||| || ||| || Sbjct 496025 CCGCGTCGGACGGCATCGTTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGG 495966 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | || | | ||||| ||||||||||| ||| ||| || ||||| ||| || | Sbjct 495965 TAACCGAAGCGCGCTGCTTCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGA 495906 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGA 125311 |||| || ||||| |||| |||||| ||||| Sbjct 495905 TGTATTCGCTCCTGATCGACACGTACATCCGCGA 495872 >seq28 Length=1484777 Score = 96.9 bits (106), Expect = 5e-15 Identities = 236/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| | |||||||| ||||| || || ||| | |||| || ||||||| | ||| Sbjct 598377 GGTGATTTAGGGCCAGTATACGGCTTTCAATGGCGCCACTTTGGTGCCAAGTACGG-GAC 598319 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||| | || || ||| | || |||||| || | || | | || || | Sbjct 598318 ATGCCACGATGATTACAAGGGAAAAGGCAAAGATCAACTGGCTGA-AGTGATCGATAAGA 598260 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||| ||||||| ||| | |||||| | |||| | |||||||| || | | Sbjct 598259 TAAAGAACAATCCATATGATCGTAGGATCATTATGTCTGCCTGGAATCCGAGCGACATTC 598200 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTAC-GATGGCAAA 70303 | ||||| ||||| || || || |||||||| ||||||| | | | || ||| | Sbjct 598199 CGAACATGGCGCTACCCCCTTGCCATTGTTTGGCCCAGTTTTT-TGTTGCTGACGGCGAG 598141 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 |||| || ||||| || || |||||| |||| | ||||| || || || ||| Sbjct 598140 CTGTCCTGTCAGATGTACCAACGGTCAGCCGACGTGGGTTTGGGTGTCCCTTTCAATATT 598081 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 |||||||| || || |||| ||||||||||| ||| | || || || || Sbjct 598080 GCAAGCTACTCCTTGCTGACACACATGATTGCCCACGTCACTGGGCTTAA 598031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046500097960