Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 140 7e-28 seq1 132 1e-25 seq10 86.0 1e-11 >seq3 Length=13649947 Score = 140 bits (154), Expect = 7e-28 Identities = 223/312 (71%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 || ||||| ||| ||||| || |||||| | || ||||| | ||||| ||||| Sbjct 8055096 ACGCACGACGACCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAC 8055037 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 ||||| | || ||||| ||||| || |||||||| || ||||| | | |||| ||||| Sbjct 8055036 GGTTTCCTGCGCATGTACTGGGCGAAGAAGATACTCGAGTGGACCAAAACTCCCGAGGAA 8054977 Query 238698 GCTCTTAGATATAGTATT-TATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTA 238755 || || || | | | | ||||| ||||| ||| || || || ||| || || | Sbjct 8054976 GCGCTC-GAGACGGCAATCTATCTCAACGACCGGTACAGCCTGGATGG-ACGCGACCCGA 8054919 Query 238756 ACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAG 238814 |||||||||| ||||| |||||||| || || | |||||| ||||| ||| ||| Sbjct 8054918 ACGGATACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGATCAGGGC-TGGAAGGAG 8054860 Query 238815 AGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGAT 238874 ||| || || || ||| | ||||||||||| || |||||| |||| ||| ||| | Sbjct 8054859 AGAGAAATCTTCGGTAAAATAAGATACATGAACTACGAAGGATGTAAGCGAAAGTTTAAC 8054800 Query 238875 GTAAATGCTTTT 238886 || ||||| ||| Sbjct 8054799 GTTAATGCATTT 8054788 >seq1 Length=20238125 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| ||||| ||||| || | || || || | ||||| || Sbjct 19807221 GTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCATCCTCCAACTGTTTGCCG 19807162 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||||| ||||| ||||| || ||||| || ||||| || || Sbjct 19807161 GCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTATCTTGGATCTTGGCCTTC 19807102 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || ||||| || || || ||||| ||||| || ||| Sbjct 19807101 ACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATGGTCTTCCCAGTGAGGGTT 19807042 Query 104543 TTTACAAATATCTGCAT-TTTGTGT 104566 || ||||| |||||||| ||| ||| Sbjct 19807041 TTCACAAAAATCTGCATCTTTCTGT 19807017 >seq10 Length=7496699 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| |||||||| || || || || |||||| ||| || ||||| || || ||| Sbjct 495670 GTTGCGTTTGCCGCCGTCGAGGGCATCTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGG 495611 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| | ||||| ||||| || || || ||||| ||||| |||| | ||| Sbjct 495610 CTGAAGAAGCGGGGCCTGATGCCGGGTTTGACCTTCTCGAACGAGCTGATTTCGCGCGAC 495551 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGT 269284 || || | ||||||||||| || ||| Sbjct 495550 GAGGGCCTGCACTGCGACTTTGCCTGT 495524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151378174607668