Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 3e-13 seq8 89.7 3e-13 seq4 87.8 9e-13 seq27 84.2 1e-11 seq7 84.2 1e-11 >seq16 Length=4671747 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || |||| | || |||||||||| ||||||||||||||||||||||||| Sbjct 2120305 AAAAAACTAACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 2120364 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||| | |||| Sbjct 2120365 CTCTAACCAGCTGAGCTATGGAGCCG 2120390 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 |||| |||| | || |||||||||| ||||||||||||||||||||||||||||| Sbjct 2120973 TCAACCTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTA 2121032 Query 11510 ACCAACTGAGCTAATGGGCCG 11530 |||| |||||||| | |||| Sbjct 2121033 ACCAGCTGAGCTATGGAGCCG 2121053 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2122983 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2123042 Query 11516 TGAGCTA 11522 ||||||| Sbjct 2123043 TGAGCTA 2123049 >seq8 Length=9380469 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || ||| ||| | || |||||||||| ||||||||||||||||||||||| Sbjct 4547838 AAAAAAACACATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 4547897 Query 11503 CGCTCTRACCAACTGAGCTA 11522 |||||| |||| |||||||| Sbjct 4547898 CGCTCTAACCAGCTGAGCTA 4547917 >seq4 Length=12071184 Score = 87.8 bits (96), Expect = 9e-13 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 11172796 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 11172855 Query 11515 CTGAGCTAATGGGCC-GTCGAC 11535 |||||||| | ||| |||||| Sbjct 11172856 CTGAGCTATGGAGCCGGTCGAC 11172877 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 11132575 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 11132516 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 11132515 CTGAGCTA 11132508 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 11134321 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 11134262 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 11134261 CTGAGCTA 11134254 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11133855 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11133796 Query 11516 TGAGCTA 11522 ||||||| Sbjct 11133795 TGAGCTA 11133789 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11175173 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11175232 Query 11516 TGAGCTA 11522 ||||||| Sbjct 11175233 TGAGCTA 11175239 >seq27 Length=1630999 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 921757 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 921698 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 921697 CTGAGCTA 921690 >seq7 Length=10083987 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 5861103 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 5861044 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 5861043 CTGAGCTA 5861036 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486830727196