Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19 266 4e-66 seq10 131 2e-25 >seq19 Length=3534686 Score = 266 bits (294), Expect = 4e-66 Identities = 1186/1858 (64%), Gaps = 38/1858 (2%) Strand=Plus/Minus Query 62015 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62074 ||| || || || || || |||||||| ||||| || || || | |||| ||||| || Sbjct 2154461 TGCCGGCTTGGTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAA 2154402 Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134 ||| || ||| || || |||| |||| || || | || || || | || || Sbjct 2154401 ATGAATCGACGTCAGCTTACCATAATTCGGCTCGGCCACGTGAATGTTGAACGACTGCGA 2154342 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 62194 || || ||||| || || | || || |||||||| || ||| || | |||||| Sbjct 2154341 CTGGTCAATGAACGCCCCACGATCGGCCGCCATTTTGATACACGTTTTCACCGAAATTTC 2154282 Query 62195 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGG 62250 ||||| || || || || |||| | || | |||| | | | | ||||| |||| Sbjct 2154281 CCAAACCGTCTTGTACAAGTCGCGGATGTGCTGC-GGAATTTCCTCGATCTTCTGGATGG 2154223 Query 62251 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 | ||| | || | || | || || || ||||| | ||| | | || || | Sbjct 2154222 AACCATTGTGCGCGAGGATGTTGTTTTTCATTTCATCGTCCCACAGGCCTAAATCCGTCA 2154163 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | || | ||| |||| || || || || || || |||| || | |||| ||| Sbjct 2154162 GGTCCTGTAGCAAATGATGATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTGT 2154103 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 | | || || ||||| || | |||||| || || ||||| || || || || || | Sbjct 2154102 AGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAG 2154043 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTT-CTAAGACCGTATGTTCTG--ATTTTAT 62487 | |||||||| || |||| || || | | || | || || ||| | | || || | Sbjct 2154042 CGGTCGGCATCGGAGCCAACAG-AAGCGAGTTGCGAACGCC--ATGCTTGGCAATCTTTT 2153986 Query 62488 CTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTA 62547 | || || |||| ||||| || || | || || | Sbjct 2153985 CCTTCAGCACACCCCAGTTCCACAGCTCGGTGGGGGTCTTGTTCCACATGTCGTACTGCA 2153926 Query 62548 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 | || || || ||| | | || ||| | || || ||||| | || || | || Sbjct 2153925 GCATCCCCTTGCTGACCGGACTGCCCT-CGTACGTCTCGTACGTGCCATCGCGGGCGGCC 2153867 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 || |||||||| ||||| || || ||||| || |||||||||||||| | | || || Sbjct 2153866 AGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGC 2153807 Query 62667 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62726 | || || || || || | || || | ||||| ||||| || || | || Sbjct 2153806 TTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATGCCC 2153747 Query 62727 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62786 || || || |||||||| || || || | | | || ||| | ||||| || | || Sbjct 2153746 TGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACCGGG 2153687 Query 62787 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCC 62843 || || ||||| || || ||||| || || || | ||||| | ||| | || ||| Sbjct 2153686 TAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTC---TTGGCGACTTCC 2153630 Query 62844 TTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAAGGCAACAGA 62899 |||||||| |||||| | | | || || | || |||||||||| || | || Sbjct 2153629 TTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCT-TCACGAACATGTTCAGCGCGATTGA 2153571 Query 62900 TGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||||||| || || |||| |||| | | | || || | | || || ||||| Sbjct 2153570 TGCCAGATTGCAGACCGCTATTTCATCCTTGGA--CGAGTACTCGACGATTTCCGTGCAC 2153513 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 || || |||||||| || || | || ||||| || ||||| || ||||||||| Sbjct 2153512 AGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCC 2153453 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||| | || || || || | ||| ||||| || || || ||| | Sbjct 2153452 TTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGA 2153393 Query 63078 ACTCGAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATC 63135 | ||||||| | | | ||| | | | || | ||||| ||| || | Sbjct 2153392 TCCTGAGCCTTGACCTGACGGATAA--ACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCT 2153335 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 ||| ||||| |||||||| || || ||| ||||| || | ||| |||||||| Sbjct 2153334 TTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAGC 2153275 Query 63196 ACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 |||| |||| || ||| || || | ||| || ||||| || | ||| || || Sbjct 2153274 TCCACATCTCGTTCG-CCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAG 2153216 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 || | || | | | ||||| || || || ||||| || |||||||| ||| | Sbjct 2153215 AACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCG 2153156 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||| |||||||| || | ||| || || | | || || || ||||| || Sbjct 2153155 AACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCG 2153096 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 ||||| || | || | |||||||| || || || | || ||| || | | ||||| Sbjct 2153095 CCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTG 2153036 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 63492 || || || || || || | ||| || |||| | ||||| || | | ||| | | Sbjct 2153035 GAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCA-A 2152977 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 | || || || || ||| || || || | ||||| | || |||||||| || || | Sbjct 2152976 G-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGC 2152918 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 |||| ||||| || || ||| | || ||||| ||| ||| | || |||| | Sbjct 2152917 CCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTG 2152858 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | | || ||| || ||||| || || |||||||| | || || |||||||| | Sbjct 2152857 TCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGATTAT 2152798 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | ||||| || || | || |||||| ||||| || | || || ||||| | || Sbjct 2152797 AGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGCA 2152738 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 | ||||| |||| |||||||||||| || || |||| || ||| || ||||| | Sbjct 2152737 TATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGTTCCAGCG 2152678 Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 |||| || |||||||| ||||| || || || || || || || | ||||| || Sbjct 2152677 TTTTGAAGCCAAAATAATTGTAGCCGAAATCGCGATCATATATGATGGCAGAGTTCAG 2152620 >seq10 Length=7496699 Score = 131 bits (144), Expect = 2e-25 Identities = 188/260 (72%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| ||| || || ||||||||||| |||||||| | ||| || ||||| Sbjct 495513 TTGAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTC 495572 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || || | || ||||| ||||| ||||| || ||||| || |||| ||||| | | Sbjct 495573 GAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAA-GCT 495631 Query 33412 CCAG-AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 || | ||||||||| || || || || ||||| |||| | | ||| ||| | ||| Sbjct 495632 CCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGC 495691 Query 33471 GCTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 || || || ||||| || | ||||| ||||||||||| || || || |||| Sbjct 495692 -CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGT 495749 Query 33526 GTTTCTATGGCATTAAAGAG 33545 ||||| |||||||| || || Sbjct 495750 GTTTCGATGGCATTGAATAG 495769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936524242360