Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19 241 3e-58 seq28 114 3e-20 >seq19 Length=3534686 Score = 241 bits (266), Expect = 3e-58 Identities = 539/800 (67%), Gaps = 12/800 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| || | || ||||| || |||||||||||| | ||||| || || || || || Sbjct 2152704 ATCAAGGGCAAGATCGTTGAGCGACCGCAGCATATGCTGATGCGCGTAGCCATCGGCATT 2152763 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 || || |||| | ||||| || || || || ||||| || || | ||| || Sbjct 2152764 CACGGCGAGGATATCGATGCGGCCATAGAGACCTATAATCTACTCTCGGAGCGTTACTTT 2152823 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 ||||| || |||| ||| ||| |||| || | ||| ||| | ||||| ||| Sbjct 2152824 ACGCATGCGTCGCCTACATTGTTTGCGGCTGCGACACAACGTCCGCAGCTTTCTTCCTGC 2152883 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 ||||| || | ||| |||||| ||||||||| || | ||||| | ||| | || Sbjct 2152884 TTTCTGCTGACGATGTCGGACGACAGCATCGAGGGCATTTACGACACGTTGAAGCAGTGC 2152943 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCAC 363727 || || ||||| ||| || || || ||||| || || ||||| | ||||| Sbjct 2152944 GCGCTGATTTCGAAGTCGGCCGGAGGCATTGGCTTGAATG--TCCACTGCATCCGTGCGA 2153001 Query 363728 AGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || | ||||| ||| ||||| ||| || || |||||||| || ||||| || Sbjct 2153002 AGGGAACGTACAT-CGCAGGCACGAACGGAATTTCCAACGGGCTGGTGCCGATGCTGCGC 2153060 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | |||| || ||| | || ||||||||||| || |||||| || ||||| Sbjct 2153061 GTCTACAACAACACCGCGCGCTATGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCGTTC 2153120 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || |||||||| || | |||| | || |||||||| || || ||| ||| Sbjct 2153121 GCGATCTACCTCGAGCCGTGGCACGGCGATGTGTTCGAGTTTCTCGATCTGAAGAAGAAC 2153180 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || || ||||| | || || || || ||||||| || || ||||| | || | Sbjct 2153181 ACCGGCAAGGAGGAGGTCCGCGCGCGCGACATGTTCTACGCCCTCTGGGTGCCGGATCTG 2153240 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||| ||||||| ||||| ||| ||| | | ||||| ||||| ||||| Sbjct 2153241 TTCATGCAGCGCGTCGAGGCGAACGAGATGTGGAGCTTGATGTGCCCGCACGATTGTCCC 2153300 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGG 364084 || || || ||| ||||| || || | || |||||| || | || || || Sbjct 2153301 GGACTGTCGGATTCGTGGGGAGAGGAGTTTGAAAAGCTCTACAC--AGGCTACGAGAAGG 2153358 Query 364085 AGGGAAAGGCTCGTAAGACAATTC-CCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||| || | | | || || || ||| | || |||||||||||||| || ||| Sbjct 2153359 AGGG-CCGGTTTATCCGTCAGGTCAAGGCTCAGGATCTGTGGTTTGCCATCATCGAATCG 2153417 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||| | ||||| || || || ||| ||||||| ||| ||||||| |||||| |||| Sbjct 2153418 CAGGTCGAGACGGGCGTCCCGTACATGCTGTACAAGGATGCGTGCAATCGCAAGAGCAAC 2153477 Query 364204 CAGCAGCACCTTGGTACAAT 364223 || ||| || | || ||||| Sbjct 2153478 CAACAGAACGTGGGCACAAT 2153497 Score = 104 bits (114), Expect = 6e-17 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 |||||||| ||||||||| || | || || ||||| || ||||| || || ||| Sbjct 2153997 AAGCATGGCGTTCGCAACTCGCTTCTGTTGGCTCCGATGCCGACCGCTTCCACCGCGCAG 2154056 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 ||| | || |||||||||| ||||| |||| || || | || || || || Sbjct 2154057 ATCTTGGGCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTACAATCGGCGTGTG 2154116 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || || || | ||| || ||| | | | | |||| || | || || Sbjct 2154117 CTGTCGGGCGAGTTCCAGGTCGTCAATCATCATTTGCTACAGGACCTGACGGATTTAGGC 2154176 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 ||||||| || ||||| ||| | ||| |||| |||||||| | ||||| || Sbjct 2154177 CTGTGGGACGATGAAATGAAAAACAACATCCTCGCGCACAATGGTTCCATCCAGAAGAT- 2154235 Query 364960 CCAGGAT-TTCC--AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016 | |||| |||| || | ||| | | || | ||||| || || ||||||||||| || Sbjct 2154236 CGAGGAAATTCCGCAGCACATCCGC-GACT-TGTACAAGACGGTTTGGGAAATTTCGGTG 2154293 Query 365017 CGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTT 365076 ||| || | |||||||||||||| || || || || ||| |||||||| Sbjct 2154294 AAAACGTGTATCAAAATGGCGGCCGATCGTGGGGCGTTCATTGACCAGTCGCAGTCGTTC 2154353 Query 365077 AACGTATTCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGT 365134 ||| ||||| || | |||| | | | ||||| || || || ||||||||||| | Sbjct 2154354 AAC--ATTCACGTGGCCGAGCCGAATTATGGTAAGCTGACGTCGATTCATTTCTACGGCT 2154411 Query 365135 GGAAATCCGGTCTTAAGACAGG 365156 |||| || || ||||| || Sbjct 2154412 GGAAGATGGGCCTGAAGACGGG 2154433 >seq28 Length=1484777 Score = 114 bits (126), Expect = 3e-20 Identities = 216/310 (70%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||||||| | || ||||| ||||| ||||||||||||||||||||||| | ||| | Sbjct 598378 AGGTGATTTAGGGCCAGTATACGGCTTTCAATGGCGCCACTTTGGTGCCAAGTACGGGA- 598320 Query 111548 CATG-CACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTGATCAA 111605 |||| ||||| || | | | || | |||||| | | ||| || || ||| | Sbjct 598319 CATGCCACGATGATTACAAGGGAAAAGGCAAAGATCAACTGGCTGAA-GTGATCGATAAG 598261 Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATG-CATT 111664 || |||||||| ||| | |||| | || |||||| ||| ||||| || | | |||| Sbjct 598260 ATAAAGAACAATCCATATGATCGTAGGATCATTATGTCTGCCTGGAATCCGAGCGACATT 598201 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 || ||||| || || || || ||| | || |||||||| ||| ||||| Sbjct 598200 -CCGAACATGGCGCTACCCCCTTGCCATTGTTTGGCCCAGTTTTTTGTTGCTGACGGCGA 598142 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 ||| || || || ||||| || || || || || | ||| | ||||| || || ||||| Sbjct 598141 GCTGTCCTGTCAGATGTACCAACGGTCAGCCGACGTGGGTTTGGGTGTCCCTTTCAATAT 598082 Query 111785 TGCAAGTTAC 111794 |||||| ||| Sbjct 598081 TGCAAGCTAC 598072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330705372122