Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 145 7e-30 seq1 102 7e-17 >seq3 Length=13649947 Score = 145 bits (160), Expect = 7e-30 Identities = 216/302 (72%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 ||||||||||| |||||||| || |||||||||| || || ||| | || || |||| Sbjct 8054798 ACGTTAAACTTTCGCTTACATCCTTCGTAGTTCATGTATCTTATTTTACCGAAGATTTCT 8054857 Query 51043 CGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 | || || | | |||| ||||| | ||| || |||||||| ||||| || || Sbjct 8054858 CTCTCCTTCCA-GCCCTGATCGTGAATGCCGGCGATCGACCACATGCAACCGACGTATCC 8054916 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 ||| || ||||| ||||||| |||||| | ||||| ||| | || || | | || Sbjct 8054917 GTTCGGGTCGCGTCCATCCAGGCTGTACCGGTCGTTGAGATAGATTGCCGTCTCGAGCGC 8054976 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 || | | | ||||| || | || ||||| |||||||||||||||| | |||| Sbjct 8054977 TTCCTCGGGAGTTTTGGTCCACTCGAGTATCTTCTTCGCCCAGTACATGCGCAGGAAACC 8055036 Query 51222 GTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGA 51279 ||||||||||||||| || | | |||| || ||||||||||||| |||||||| Sbjct 8055037 GTGCATCTTGCCCTCCTTCACC--ATCTGCAGCTGGGCCGAGTTCCACAGGTCGTCGTGC 8055094 Query 51280 GT 51281 || Sbjct 8055095 GT 8055096 >seq1 Length=20238125 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| ||||| || ||||| || || | || || || ||||||| | || || | Sbjct 19807017 ACAGAAAGATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCG 19807076 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || |||| ||||| |||||| ||||| || ||| || || || || ||||| | Sbjct 19807077 AGCCGTCGGACACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTC 19807136 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || ||||| || | || || ||||||||||| || || |||| ||||| | || Sbjct 19807137 CAGATCAACAACGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCG 19807196 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||||||||| || || || ||||| || Sbjct 19807197 ACTACAATATTCAGAAGGAGTCTACGCTCCA 19807227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320759495365