Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 129 7e-25 seq6 114 1e-20 >seq10 Length=7496699 Score = 129 bits (142), Expect = 7e-25 Identities = 305/456 (67%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 |||||||| | |||||| || | | ||| || || || || |||||||| ||||| Sbjct 495329 CTTTTCACAGCCCAACTCCACCAGCAGCCGATCGGCGACGAACTCGATGTACTGCGACAT 495388 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 || |||||| ||||| || || | | || || || || | || | ||| || | ||| Sbjct 495389 CAGATCACAGTTCATACCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTC 495448 Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTG---GT-GGTTTTTGTA 93071 ||| | || || || | ||| | || | || | || || || || | Sbjct 495449 GATCAGCACCGCATCGCGGATGATGCTGGTCACACG----TTCGCGCGTCGGCTTCTGCA 495504 Query 93072 CGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCA 93131 | | || ||| |||| | || ||||||||| || | || ||||| || || |||| Sbjct 495505 CCAGGTACTTGAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCA 495564 Query 93132 ACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAG 93191 ||| || ||| || ||||| || | ||| || || ||||| ||||| || || | | Sbjct 495565 GCTCGTTCGAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGG 495624 Query 93192 CAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA 93251 | || || || ||| || || || || ||||| ||||| || || | || ||| ||| Sbjct 495625 CGAAGCTCCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAA 495684 Query 93252 AATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 | || || || || |||||| || | ||||| ||||| || ||||| | || | Sbjct 495685 AGTTGGCCTTCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACG 495744 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 | ||||||||||| || || |||||| ||| ||||| Sbjct 495745 GCAGTGTTTCGATGGCATTGAATAGG-AAT-TCGCT 495778 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 || || || ||||| || ||||| | || |||||||| || ||||| || ||||| Sbjct 495869 GAGTCGCGGATGTACGTGTCGATCAGGAGCGAATACATCTCGCTGTGGACGTTTTCCATC 495928 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 || || |||||||||||||| || | ||||| || | |||||| || || || | Sbjct 495929 GCGATCTGGAATCCGTAGAAGCAGCGCGCTTCGGTTACCTGCACCTCCTGGCTGAACCGT 495988 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || ||||| || || || || || || || || || ||||| || | | ||| Sbjct 495989 TCGACCAGATTCTCGTTAACGATGCCGTCCGACGCGGCGAAAAATGCGAGCACGTGCGAG 496048 Query 93533 ATAAAATGTTTCTCA-TCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATC 93591 || ||||| |||| || | || ||| |||||||| | || || || || || Sbjct 496049 ATGAAATGACGCTCACTCGGC-TTCAGCGCCTCCCAATCTTTCATGTCCTTCGACAGGTC 496107 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || || || ||||| ||||||||||| || Sbjct 496108 GACCTCCTCCACGGTCCAGAACGATGCTTCGGC 496140 >seq6 Length=10405585 Score = 114 bits (126), Expect = 1e-20 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 8487537 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 8487478 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| |||||||| Sbjct 8487477 GTGGGTTCGAACCCCACTTCTGACAAA 8487451 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 8496869 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 8496928 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 8496929 GTGGGTTCGAACCCCACTTCTGACA 8496953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851256798040