Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19 230 2e-55 seq1 141 8e-29 seq8 118 9e-22 >seq19 Length=3534686 Score = 230 bits (254), Expect = 2e-55 Identities = 1030/1614 (64%), Gaps = 42/1614 (3%) Strand=Plus/Minus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 ||| ||||| || ||||| | || |||| | |||||||||||||||||| |||||||| Sbjct 2154494 CGATTTGTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACAT 2154435 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 ||| || |||| || | ||||| || | ||||||| |||| | | || | Sbjct 2154434 GCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCATAATT 2154375 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | || ||| || || || || || ||||| || | || |||||||| Sbjct 2154374 CGGCTCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGC 2154315 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| || | ||||||| |||||||| ||||| ||||| | || | | Sbjct 2154314 CGCCATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGAT 2154255 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCG 129074 ||| | || ||||| || || ||||| | | || |||| || | || |||||| Sbjct 2154254 GTGCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTT 2154195 Query 129075 CATCTGTTCGTTGTACAAATTCAGTTTGATCAAATC-GTC-GGTCAAGTATT---TGTTT 129129 ||| ||| | || | | ||| | ||||| ||| |||| ||| || | Sbjct 2154194 CAT---TTCATCGTCCCA---CAG---GCCTAAATCCGTCAGGTCCTGTAGCAAATGATG 2154144 Query 129130 ATT----ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGG 129185 ||| || || || || |||| || || |||||| ||| | ||| ||| |||| Sbjct 2154143 ATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGG 2154084 Query 129186 CTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC 129245 ||| ||||| || |||||||| || || || || || | ||||| ||||| ||||| Sbjct 2154083 CTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAA 2154024 Query 129246 GCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA 129305 ||||||||| || | || |||| ||| | || || | ||||| ||| Sbjct 2154023 CAGAAGCGAGTTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCA 2153964 Query 129306 CATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT 129365 || | ||||| || | ||||||| |||||| |||| || ||| ||| | ||||| Sbjct 2153963 CAGCTCGGTGGGGGTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACT 2153904 Query 129366 GGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGC 129425 | ||| | |||| | ||| | |||| || ||||| || ||||| || Sbjct 2153903 GCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGC 2153844 Query 129426 GCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTA 129485 ||| | || || |||||| |||| ||||| | | |||| || || ||||| Sbjct 2153843 GCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCTTCACTCTCGTA 2153784 Query 129486 CGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCG 129545 ||| |||| || || | ||||||| || || | || | |||||| || | Sbjct 2153783 CGGGTAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCT 2153724 Query 129546 ATGTTTTCTATTGGATT--TTTG-TGCCGACAACAAGGGATAGTAGTTGATGTCTATAAT 129602 || | ||||| || | | ||| || | || |||||||| ||||| || || Sbjct 2153723 GTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACC---GGGTAGTAGTTAATGTCGATGAT 2153667 Query 129603 TTTGTTTAAATT---CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA 129659 |||||| | || | |||| | | || | || | || | | |||||| ||| Sbjct 2153666 TTTGTTCAGGTTGCGCGTGAC---AGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGTA 2153610 Query 129660 CTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGC 129719 | | | || || || || | | | | | || |||| ||||||||| || Sbjct 2153609 CGTGTGGTC--CGGCTTCACGAACATGTTCAGCGCGATT-GATGCCAGATTGCAGACCGC 2153553 Query 129720 ACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGT 129779 |||| | ||| ||||||||| ||||| | ||||| || || || || Sbjct 2153552 TATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGT 2153493 Query 129780 GCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGT 129839 ||||| | || ||| || || || ||||| ||||| ||||||| ||||||||| Sbjct 2153492 GCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGAC 2153433 Query 129840 GCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCT 129899 |||||| ||||| |||| ||||| |||| ||| || ||||||||| ||| | Sbjct 2153432 GCCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGATCCTGAGCCTTGACCTGACG 2153373 Query 129900 TACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTAC 129959 | ||| ||| |||||||| | || || | |||||| || || || Sbjct 2153372 GATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCC--AC 2153315 Query 129960 GGTGTCGAGCAACGGCGAT--TCACGCGGACACATCAAACTCCACATTCCATCCGCTTCG 130017 | ||| | | || || |||| |||||||| |||||||| | | ||| ||| Sbjct 2153314 GAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTCGCCTCG 2153255 Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTA 130077 || || | ||| |||| ||| || ||||| |||||||| |||| || ||||| Sbjct 2153254 ACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCGGACC 2153195 Query 130078 TCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGT 130137 ||||| || |||| ||||| || || || ||| | | ||| |||||||||| Sbjct 2153194 TCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCACGGC 2153135 Query 130138 TCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACG 130194 || | || || || | || || || ||| || || ||||| || | |||| || Sbjct 2153134 TCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGCGCG 2153075 Query 130195 GCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCA 130254 | ||||||||||| |||| ||| | | ||| ||||||| | ||||| |||| | Sbjct 2153074 GTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCCTGCG 2153015 Query 130255 ATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTT 130314 ||| | | || || || | | || || | | || ||||| ||| | | || Sbjct 2153014 ATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCAAGCCAATGCCTCCGGCCGACTTC 2152955 Query 130315 GATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTC 130367 || |||| |||||| | || | | ||| || |||||||| |||| ||||| || Sbjct 2152954 GAAATCAGCGCGCACT-GCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGTC 2152902 >seq1 Length=20238125 Score = 141 bits (156), Expect = 8e-29 Identities = 183/251 (73%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| |||||||| ||||| | || || || || |||| ||||| || || | Sbjct 19807021 AAAGATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCC 19807080 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || || ||||| |||||||| ||||| || || Sbjct 19807081 GTCGGACACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGA 19807140 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||||| || || |||||||||||||| |||||| |||||| | ||||| || Sbjct 19807141 TCAACAACGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTA 19807200 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT---TTTCC 22451 ||| ||||| || || || || | || | || |||||| | || || ||| |||| Sbjct 19807201 CAATATTCAGAAGGAGTCTACGCTCCACCTGGTGTTGCGACTTCGTGGTGGTGAGTTTC- 19807259 Query 22452 ATTTTAAAATT 22462 ||||| |||| Sbjct 19807260 -TTTTACAATT 19807269 >seq8 Length=9380469 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 4935970 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4936029 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| ||||| || || Sbjct 4936030 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 4936089 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| ||||| | ||||| ||| Sbjct 4936090 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTAC 4936149 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || ||| | ||| | || |||| |||| || || Sbjct 4936150 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTGCGTGGTGG 4936199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720986738615